Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05197 ATGGCGGAGCGTGCTTCTTACGGATTGGGACCTCGACTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTACGCCCTGCAGAAATATGCGAAATTCTTCGCAATTATCGGATGTTTCAAATCACACCAGAACCGCCTAGCAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATAGGAAGGTTTTGAGGTACTTCAGAAAAGATGGACACAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATGTTGGTGCAAGTTCATTTACGGATGATGTTACATCAGATTCCCAGAAGGGAAGTTCTGTATCTTCTGGCTTTCCCACAAATTATAGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACTAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCACCAAGCAAGCTCAGGATTGCACACTTTTCGTGATTCACAAAATATGGGGAATGGTCGGCAGATGGATAAGATTGATGCTCGTTCAAATAGTTCATATCATATGCATCCCTTCTCAGGTGATCATGGACAGTTTTCAATGTCTGGAACAGATTATATCCCATTTGTTCAGGGGGATAAATCTAGACCAAGTGATACTACTACCTATATTGAGGGCCAGAGAGTACATGGCATGGCATCCTGGGACAATGTCCTGGAACAATCTGCAGGATTGCCTACTGATCCTTCTCCTGTATCATCTACTTCCATTCCACCAAGTTCAACTTCAACTGGAAACATCCTTGAACAAGAACATACTGCTCTTACTGAAGAGGCAATGGCCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTCGAAGACAATACAGGAGAATTGCCTAAATGGAGCTTTTCGCAATCATTGAGTATGGAATTCGGATCTGATTATGGCACTGGTTTACTGGGAAGTGAAATTAATGCAAGTTCAGAAATTGGTCCCGACCTTTTCATGTTTAATTGCGAGCCAAAAGATCAGTCTGTGCAGCAAAACTTCTCAAAGCAGCATACAGATGCACAATCTCAGCATGCACTGAAATCTGAGCATGAAGTTCCTGGTGAAGAAAGTATCAACTATGGCTTGACCATGAGGCGTGCATTATTGGATGGAGAGGAGAGCCTGAAAAAGGTTGATAGCTTCTCTAGGTGGATTACTAAAGAACTGGCAGCGGTGGATGATCTGCATATGCAGTCTTCCCCTGGCATTTCATGGAACACAGATGAATGTGGGAACGTGATAGATGATACCTCATTGAACCTGTCCCTATCCCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATTATTGGAACATTTTTTAAGAGTCAACATGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATGAGATTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAATACAAAGTGGGCTTTGCTAAAAATGTAGATTTGGCAGATTTTTTTAACAGTTCAACTGAAATGCTGCTTCATTTGCAACTAGAGGAGTTACTTTCTTTAAACTCAGCGCGCCCTTCAAATGAAGCTTTTGAGGATGATATGGAGAGAAGAAACTTAATTTTTAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCCAACTGGAGAGATGGATATATCAAAACACAAGTTGAAGGCAGATGTGTTTCACAGGCAGCTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAAACCGGTAAAGGGCCACATGTATTAGGTCAGGACGGGCAAGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACACCAATTATAACGGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCCATCCTTATCTCCATGGGTGCAGCTGCTGGAGCAGTGACAGATCCATCTCCAGCATTTCCTTCAGGAAGGACACCTGCAGATCTTGCTTCTAGCAACGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCACCTCGAATCACTCACAATGGATGATCTAAATAAAGATGGTAGGAAAGAAACTTTTGGAGCGAAAGCAGTGCAGACAGTTTCAGAGAGAATTGCAACACCTGTGCTTTGTGGTGATATACCTGATGCTCTTTGCCTTAAGGATTCTCTTGATGCTGTTCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAATCATTTCAGAGGAAGCAGTTAGCTCAGTATGATGATGATGAGTTTGGATTGTCAGATCAGCAAGCTATTTCCCTTCTAGCTTCTAAGACATGCAAATCTGGACAAGGAGAGGGTTTGGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGAAAGAAGTATAAAACAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGGCGAAAGGGCAGCGGTTTACGTGGATTTCGACAGGATGCCCTTACTAAGCTCCCCGAACAACCAAGCGATCCTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGCAAGGTTCCAAAAGGCTCTTTCAAGGGTGAAATCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTGGTAGAGGACTTCCGTCAAACCAAGCAGGCATGTAATTTGAGTTTGGTAAATTCGGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTTTTACCTATAGCATTCAATTGA 3243 0.4237 MAERASYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGASSFTDDVTSDSQKGSSVSSGFPTNYSSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHTFRDSQNMGNGRQMDKIDARSNSSYHMHPFSGDHGQFSMSGTDYIPFVQGDKSRPSDTTTYIEGQRVHGMASWDNVLEQSAGLPTDPSPVSSTSIPPSSTSTGNILEQEHTALTEEAMASQSLQSNWQIPFEDNTGELPKWSFSQSLSMEFGSDYGTGLLGSEINASSEIGPDLFMFNCEPKDQSVQQNFSKQHTDAQSQHALKSEHEVPGEESINYGLTMRRALLDGEESLKKVDSFSRWITKELAAVDDLHMQSSPGISWNTDECGNVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIIGTFFKSQHEVATCNWSCMFGEVEVPAEVLANGILCCQAPPHEIGRVPFYVTCSNRFACSEVREFEYKVGFAKNVDLADFFNSSTEMLLHLQLEELLSLNSARPSNEAFEDDMERRNLIFKLISLKEEEEYSSKEEPTGEMDISKHKLKADVFHRQLKEKLYSWLLHKVTETGKGPHVLGQDGQGVLHLVAALGYDWAITPIITAGVNINFRDVNGWTALHWAASCGRERTVAILISMGAAAGAVTDPSPAFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLTMDDLNKDGRKETFGAKAVQTVSERIATPVLCGDIPDALCLKDSLDAVRNATQAADRIHQVFRMQSFQRKQLAQYDDDEFGLSDQQAISLLASKTCKSGQGEGLANAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALTKLPEQPSDPVKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKQACNLSLVNSEEAVDGVEDLIDIDMLLDDENFLPIAFN. 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05197 1080 MobiDBLite consensus disorder prediction 391 417 - -
Seca12g05197 1080 Gene3D Immunoglobulins 487 582 IPR013783 -
Seca12g05197 1080 MobiDBLite consensus disorder prediction 285 308 - -
Seca12g05197 1080 MobiDBLite consensus disorder prediction 146 187 - -
Seca12g05197 1080 FunFam Calmodulin-binding transcription activator 2 487 583 - -
Seca12g05197 1080 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1041 - -
Seca12g05197 1080 SMART iq_5 925 947 IPR000048 GO:0005515
Seca12g05197 1080 SMART iq_5 902 924 IPR000048 GO:0005515
Seca12g05197 1080 SUPERFAMILY E set domains 494 579 IPR014756 -
Seca12g05197 1080 FunFam Calmodulin-binding transcription activator 2 902 950 - -
Seca12g05197 1080 Gene3D - 663 797 IPR036770 -
Seca12g05197 1080 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Seca12g05197 1080 SMART ANK_2a 766 795 IPR002110 GO:0005515
Seca12g05197 1080 SMART ANK_2a 727 756 IPR002110 GO:0005515
Seca12g05197 1080 Gene3D - 903 950 - -
Seca12g05197 1080 Pfam Ankyrin repeats (3 copies) 699 788 IPR002110 GO:0005515
Seca12g05197 1080 SUPERFAMILY Ankyrin repeat 683 788 IPR036770 -
Seca12g05197 1080 SMART CG_1_2 18 136 IPR005559 GO:0003677
Seca12g05197 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 953 IPR027417 -
Seca12g05197 1080 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Seca12g05197 1080 ProSiteProfiles Ankyrin repeat region circular profile. 727 752 - -
Seca12g05197 1080 ProSiteProfiles IQ motif profile. 926 950 IPR000048 GO:0005515
Seca12g05197 1080 ProSiteProfiles IQ motif profile. 903 932 IPR000048 GO:0005515
Seca12g05197 1080 Pfam IQ calmodulin-binding motif 905 923 IPR000048 GO:0005515
Seca12g05197 1080 Pfam IQ calmodulin-binding motif 928 947 IPR000048 GO:0005515
Seca12g05197 1080 Pfam IPT/TIG domain 494 579 IPR002909 -
Seca12g05197 1080 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05197 Seca-Chr12 140549540 140559902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05197 1 1061 CAMTA Transcription Factor Family AT5G64220 53.001 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca12g05197 Ank_2 4.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05197 K21596 - gmx:100795682 1752.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05197 12 140549540 140559902 Seca6g05142 6 118535482 118544644 PCT