Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05194 ATGGAGGACTATCATGTAGCGAAATTCGTCCAGCTCAAACGGCAAGAGCTAGGACTTTTTGCTATATATGACGGACACCTGGGAGACAGTGTACCGGCATATTTACAAAAGCATCTCTTTTCTAATATTTTGAAGGAAGAGGACTTCTGGAATGATCCATTCATGTCCATTTGTAAAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCTGTGACTGCAATTCTCATCAATAATCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGAGCAGTTTTGTCAAGGGGAGGGGTGGCTGTACAGATGACTACTGATCATGAACCCAATACTGAACGGGGTAGCATTGAGAACAGAGGTGGCTTTGTCTCAAATATGCCAGGTTCTTCTATTAACCCTGAGCAATTTCTTCATTTTTGGGTTATATCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCGGTTTCTCGAGCATTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTATGCTGATATTGACCCAGATATTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAAGCTGTTGATATTGCAAGAAGGATAAAGGATCCACAAAGGGCAGCGAAACAGCTACTTACTGAGGCATTGAACAGAGAGAGTAAAGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGCATGA 759 0.4242 MEDYHVAKFVQLKRQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWNDPFMSICKAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRGGVAVQMTTDHEPNTERGSIENRGGFVSNMPGSSINPEQFLHFWVISGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADIDPDIELLILASDGLWKVMANQEAVDIARRIKDPQRAAKQLLTEALNRESKDDISCIVVRFKA. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05194 252 ProSiteProfiles PPM-type phosphatase domain profile. 1 250 IPR001932 -
Seca12g05194 252 Gene3D - 1 252 IPR036457 -
Seca12g05194 252 SMART PP2C_4 1 248 IPR001932 -
Seca12g05194 252 CDD PP2Cc 1 250 IPR001932 -
Seca12g05194 252 PANTHER PROTEIN PHOSPHATASE 1 250 IPR015655 GO:0004722|GO:0006470
Seca12g05194 252 FunFam Probable protein phosphatase 2C 39 1 251 - -
Seca12g05194 252 SUPERFAMILY PP2C-like 1 251 IPR036457 -
Seca12g05194 252 Pfam Protein phosphatase 2C 150 243 IPR001932 -
Seca12g05194 252 Pfam Protein phosphatase 2C 1 136 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05194 Seca-Chr12 140527910 140531479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05194 1 251 PP2C-type Phosphatase Gene Family AT1G22280 69.261 6.88e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05194 K17506 - gmx:100801722 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05194 12 140527910 140531479 Seca12g05194 12 140527910 140531479 ECH