Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05181 ATGGGTCCTTCTGGTTGTGGAAAGTCCACACTTCTTGATACTTTAGCAGGAAGACTAGGTTCAAAGACAAAACAAGCAGGGAAGATCCTAATCAATGGCCGCAAACAAGCACTGGCTTATGGAACATCTGCATATGTAACAGAAGATGATACTATTTTGACAACTCTAACAGTTGGAGAAGCTGTATACTACTCAGCTTACCTCCAATTGCCAGATTCCATGTCAAAATCAGAGAAACAAGAGAGAGCAGATTTCACAATCAGAGAAATGGGTCTGCAAGATGCCATTAACACCAGAATTGGAGGGCGAGGATTGAAAGGCATAAGTGGGGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCAAGGCTTCTCTTCCTTGATGAACCCACTAGTGGACTTGATAGTGCAGCTTCTTATCATGTTATGAATAGAATATCTAGCTTAAACAAAAAGGATGGCATTCAAAGGACTATTATTGCATCAATCCATCAGCCAAGTAATGAAATTTTTCAACTTTTCCACAACCTTTGTCTTCTGTCTTCAGGGAAAACAGTTTACTTTGGACCTGCCTCTGCTGCAAATAAGTTTTTCACATCAAATGGTTTTCCCTGCCCAAGTCTCCAGTATCCTTCTGATCACTTCATAAAAACCATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGATTGGGTGGAGGGCTAAGCACAGAAGAAGCAATTCATATTCTTGTTAAATCATATGATTCATCTGAAATTAGTTACCAAGTTCAAAAAGAAGTAGCTCAAATAAAAAAAAGGGACTCTGGCACAATTGAGAAGAAAAGTCATGCTGACTTTTTTACTCAATGCCTCATTCTTACAAGAAGATCTTTTGTGAATATGTATCGTGAAGTAGGCTATTACTGGTTGCGCCTACTTATCTATGGTGCCTTGGCTTTAAGTCTTGGTACCATGTTCTTTGACATTGGTTCAAGCAGTGAATCAATTCAGGTAAGAAATGGTGTTTGA 1023 0.392 MGPSGCGKSTLLDTLAGRLGSKTKQAGKILINGRKQALAYGTSAYVTEDDTILTTLTVGEAVYYSAYLQLPDSMSKSEKQERADFTIREMGLQDAINTRIGGRGLKGISGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMNRISSLNKKDGIQRTIIASIHQPSNEIFQLFHNLCLLSSGKTVYFGPASAANKFFTSNGFPCPSLQYPSDHFIKTINKDFEQDPEKGLGGGLSTEEAIHILVKSYDSSEISYQVQKEVAQIKKRDSGTIEKKSHADFFTQCLILTRRSFVNMYREVGYYWLRLLIYGALALSLGTMFFDIGSSSESIQVRNGV. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05181 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 200 IPR027417 -
Seca12g05181 340 Gene3D - 1 230 IPR027417 -
Seca12g05181 340 Pfam ABC transporter 1 136 IPR003439 GO:0005524
Seca12g05181 340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 211 IPR003439 GO:0005524
Seca12g05181 340 SMART AAA_5 1 183 IPR003593 GO:0016887
Seca12g05181 340 Pfam ABC-2 type transporter 168 233 IPR043926 GO:0140359
Seca12g05181 340 ProSitePatterns ABC transporters family signature. 108 122 IPR017871 GO:0005524|GO:0016887
Seca12g05181 340 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05181 Seca-Chr12 140206853 140210301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05181 1 146 Calmodulin-binding Proteins AT2G36910 28.667 2.76e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05181 K05681 - gmx:100789571 611.298