Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05176 ATGGGAGGTCATCAGCGAGAAAAGGATGAGATTACTGTGACATGGGAGAATTTGGAGGCCACTGTTACAAATGGAAAGAATAGAAAAATAATTCTGCATGGACTCACAGGTTATGCCCAGCCAGGGAAGCTTTTGGCTATAATGGGTCCTTCAGGCTGTGGCAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTGAGATCAAACATAAAGCAATCAGGGAAGATCCTAATCAATGGCCACAAACAGGAACTGGCTTATGGAACATCAGGCTATGTAACACAAGATGATGCTATGCTGTCAACTTTAACAGCTGGGGAAACTCTATACTACTCAGCTCAGCTCCAATTTCCAGATTCTATGACCATAACAGAGAAGAAGGAACAAGCAGATATCATACTCAAAGAAATGGGTCTCCAAGATGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGCCTAAGTGGGGGACAAAGGAGGAGACTCAGCATTTGTATTGAGATTCTAACACGCCCCAGACTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTAAATCTAAGGGATAGCATTAGAAGGACTATTGTTGTATCCATTCATCAACCAAGCAGTGAAGTTTTTCAACTTTTCCATGACCTCTGTCTTCTGTCTTCAGGTGAAACAGTATATTTTGGTCCTGCCCCTGATGCAAATCAGTTTTTTGCTTCAAATGGTTTTCCTTGCCCAACTCTCCACAATCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTCGAACAGGCTATGGAAGGTAATTGTTTCATGAAATTTATTAACTTTCAGGATGCTGAAGAAGGCTTTGGTAAAGGAGTAACTACTGAAGAAGCAATTGACATACTTGTAAAATCTTATAAATCGTCTGAAATTAGAAATCAAGTTCGGAATGAAGTGGCAAAAATAAGTGAAAGTGAATCGAGTGTAGTAGGGAAGAAGAGGACCCACGCTGCATTCCTGAGTCAGTGCATGGTTTTGATAAAAAGATCTTCGCTGCAAATATATCGTGACATAAGCAATTACTGGTTACGTCTTGCTGTCTTTATTGCAATAGCTTTAAGCCTTGGCTCTATCTTTTATAACATCGGCCCCAGTAAAGGATCTATTCAGGAAAGAGGATCGCTGCTTACTTTTTTTATGTCAGTTCTGACTTTCATGACACTCATTGGTGGATTCTCTCCGTTAATAGAAGAAATGAAGGTATTTGAAAGAGAGAGATTGAATGGGCATTATGGTGTTATTGCTTTTCTCATTGGCAACATATTCTCTGCTATTCCTTACATGCTAATGATCTCTCTTATTCCTGGAGCAATAGTTTATTACCTTTCTGGATTGCACAAAGGAATGGAACACTTTCTTTATTTTGCATCTGTCTTATTTGCCACTGTTATGTGGGTTGAGAGCCTCATGATGGTTGTGGGTAGCATCTTCCCAAATTTTGTAATGGGTGTGATCATTGCTGGTGGGGTTGAAGGACTTGCCATTTTAACTGGTGGATTCTATAGACTGCCAAACGATCTTCCCAAACCATTATGGAAATACCCTTTTTATTATGTTTCCTTCCTCACTTATGCTTTCCAAGGATCTTTCAAGAATGAATTTGAAGGCTTAAAATTTGTTTTATATCAAGATGGAGGTGCCAAAGCTGTTAGTGGTACAGAAGTATTGGCCGGGACATGGCACGTGCAAATGGGTCACTCAAAGTGGGTAGATCTTGTTATAATGTTTGGAATGATTGCTATGTATCGAGTTTTATTTTTGGCTATCACTAAAAGTAAGGAGAAGTCCAAACCTGTTGTTGCCATTAATGTTCCCCAAACAAAGATATTTTCTAAAACCAACATGGATGAACTATAG 1938 0.3947 MGGHQREKDEITVTWENLEATVTNGKNRKIILHGLTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLRSNIKQSGKILINGHKQELAYGTSGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMTITEKKEQADIILKEMGLQDAINTRVGGWGSKGLSGGQRRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIASLNLRDSIRRTIVVSIHQPSSEVFQLFHDLCLLSSGETVYFGPAPDANQFFASNGFPCPTLHNPSDHYLRIINKDFEQAMEGNCFMKFINFQDAEEGFGKGVTTEEAIDILVKSYKSSEIRNQVRNEVAKISESESSVVGKKRTHAAFLSQCMVLIKRSSLQIYRDISNYWLRLAVFIAIALSLGSIFYNIGPSKGSIQERGSLLTFFMSVLTFMTLIGGFSPLIEEMKVFERERLNGHYGVIAFLIGNIFSAIPYMLMISLIPGAIVYYLSGLHKGMEHFLYFASVLFATVMWVESLMMVVGSIFPNFVMGVIIAGGVEGLAILTGGFYRLPNDLPKPLWKYPFYYVSFLTYAFQGSFKNEFEGLKFVLYQDGGAKAVSGTEVLAGTWHVQMGHSKWVDLVIMFGMIAMYRVLFLAITKSKEKSKPVVAINVPQTKIFSKTNMDEL. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05176 645 CDD ABCG_EPDR 11 240 - -
Seca12g05176 645 SMART AAA_5 41 230 IPR003593 GO:0016887
Seca12g05176 645 Pfam ABC transporter 33 183 IPR003439 GO:0005524
Seca12g05176 645 Pfam ABC-2 type transporter 215 277 IPR043926 GO:0140359
Seca12g05176 645 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524|GO:0016887
Seca12g05176 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 258 IPR003439 GO:0005524
Seca12g05176 645 Gene3D - 3 253 IPR027417 -
Seca12g05176 645 FunFam ABC transporter G family member 11 11 312 - -
Seca12g05176 645 Pfam ABC-2 type transporter 349 561 IPR013525 GO:0016020|GO:0140359
Seca12g05176 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 249 IPR027417 -
Seca12g05176 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 8 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05176 Seca-Chr12 140099980 140108757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05176 7 219 Calmodulin-binding Proteins AT2G36910 30.180 2.50e-11 65.1