Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05174 ATGACTACCCTTTCTTATCCACTTGCTCAACCTAAGGTTTTGCAAACTGATCCACAATTTTTTACCACATTTGAAATTGATGGAAGTGATGAGAAGGAGAGCATAACAGTTACATGGGAGAATTTGTGGGTCACTGTTCCAAATGGAAAGAAAAGGAAACCAATTCTTCAGGGTCTTACAGGTTATGCCCAGCCAGGAAGGCTTCTGGCTATAATGGGTCCTTCAGGCTGTGGAAAATCCACTCTTCTTGATGCTTTAGCAGGAAGATTAAGCTCAAACATAAAGCACACAGGAAATATTCTAATCAATGGTCACAAACAAGCACTGGCTTATGGAATATCAGGCTATGTAACACAAGATGATGCTATGCTATCAACTTTAACAGCTGGGGAAACTTTATACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCCATAACAGAGAAGAAAGAACAAGCAGACATCATACTCAGAGAAATGGGTCTGCAAGATGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGCCTAAGTGGAGGACAAAAGAGGAGACTCAGCGTTTGCATTGAGATTCTAACACGCCCCAGACTTCTATTCCTTGATGAACCAACTAGTGGTCTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTCTAAATCTAAGGGATAGCATTAGAAGGACCATTGTTGTATCCATTCATCAACCAAGCAGTGAAGTTTTTCAACTTTTCCATGACCTCTGTCTTCTGTCTTCAGGTGAAACAGTATATTTTGGTCCTGCCCCTGATGCAAATCAGTTTTTTGCTTCAAATGGTTTTCCTTGCCCAACTCTCCACAATCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGTACACAAACTTGATGTTGAAGAAGGCTTTGGTAAAGGAGCAACTACAGAAGAAGCAATTTGTAACCTTGTAAAGTCTTATAGATCGTCTCAAATTAGAAAACAAGTTAAAACTGAAGTGGCAAAAATAAGTGAAAGTGACTCTGGGGCAATAGGGAAGAGGAGAATCCATGCTGCATTCCTCACTCAATGCCTTGTTCTTATAAGGAGATCTTCTTTGCAATTGTTTCGTGACATAAGCAATTACTGGTTACGTTTAGCTGTCTTTATTGTAATAGCTATAAGCATTGGCTCTATCTTCTATGACATTGGCTTAAGTTATGGATCAATTCAGGGGAGAGGTTCGCTGCTCACATTTCTTATCTCAGTTTTGACTTTCATGACCCTTGTTGGTGGATTCTCTCCACTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAATGGACACTATGGTGTAACGGCTTTTCTCATTGGCAACATATTCTCTGCCATTCCTTACATGATAATGATCTCTCTGATTCCTGGAGGAATAGCTTACTACCTTTGCGGGATGCACAAAGGACTAGAACATTTTTTGTACTTCACTTCTTTACTATTTTCCATTGTGATGTGGGTTGAGAGCCTTATGTTAGTTGTTGGGAGCATATCCCCCAATTACGTAATTGGCATGTTTATTACTGGTGGAATTGAAGGACTCATGATTTTAACAGGTGGATTCTATCGGCTACCAAATGATCTTCCCAAACCATTATGGAAATACCCATTCTACTATGTTTCATTTCTCAAATATGCCTTCCAAGGATCATTCAAGAATGAATTTGAAGGCTTAACATTTTCTAGAGACCAATATGGAGGCACCAAATCCATTAGTGGTAGAGAAATACTAATTGATACATGGCATGTGGAAATAGATCACTCTAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTATTTTGTATCGAGTTTTGTTCTTGGTCATCACTAAAAGCAAGGAGAATCTAAAGCCCTTTGCCTTAAGTGGTTCCCAATCATAA 1944 0.393 MTTLSYPLAQPKVLQTDPQFFTTFEIDGSDEKESITVTWENLWVTVPNGKKRKPILQGLTGYAQPGRLLAIMGPSGCGKSTLLDALAGRLSSNIKHTGNILINGHKQALAYGISGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMSITEKKEQADIILREMGLQDAINTRVGGWGSKGLSGGQKRRLSVCIEILTRPRLLFLDEPTSGLDSAASYYVMSRIASLNLRDSIRRTIVVSIHQPSSEVFQLFHDLCLLSSGETVYFGPAPDANQFFASNGFPCPTLHNPSDHYLRIINKDFEQVHKLDVEEGFGKGATTEEAICNLVKSYRSSQIRKQVKTEVAKISESDSGAIGKRRIHAAFLTQCLVLIRRSSLQLFRDISNYWLRLAVFIVIAISIGSIFYDIGLSYGSIQGRGSLLTFLISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGVTAFLIGNIFSAIPYMIMISLIPGGIAYYLCGMHKGLEHFLYFTSLLFSIVMWVESLMLVVGSISPNYVIGMFITGGIEGLMILTGGFYRLPNDLPKPLWKYPFYYVSFLKYAFQGSFKNEFEGLTFSRDQYGGTKSISGREILIDTWHVEIDHSKWVDLAIMFGMIILYRVLFLVITKSKENLKPFALSGSQS. 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05174 647 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Seca12g05174 647 Gene3D - 24 277 IPR027417 -
Seca12g05174 647 SMART AAA_5 65 254 IPR003593 GO:0016887
Seca12g05174 647 CDD ABCG_EPDR 34 264 - -
Seca12g05174 647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 282 IPR003439 GO:0005524
Seca12g05174 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 30 640 - -
Seca12g05174 647 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Seca12g05174 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 273 IPR027417 -
Seca12g05174 647 FunFam ABC transporter G family member 11 35 326 - -
Seca12g05174 647 Pfam ABC-2 type transporter 362 575 IPR013525 GO:0016020|GO:0140359
Seca12g05174 647 Pfam ABC-2 type transporter 239 295 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05174 Seca-Chr12 140038505 140044753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05174 31 243 Calmodulin-binding Proteins AT2G36910 30.045 1.39e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05174 K05681 - gmx:100790102 1084.32