Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05165 ATGGGACTTCATTACAGAAAGTTGTTATCTGACTGTGACTATTTCTGTAAAGTAGAACAGTCTTGTTCATCAGATTGTGATGATTGCATCAAGAACTGCAAGAAGTACTATCTACCATCACCATCACCACCTCCGGATTCAGATAACACCAAAACCAAAACCTCCACTTACTTGATCATCAGTTTTTCTCTTGTAGCTATAGCTTTCTTTGTTGTGTGCTGCTATGCCATCTATGTCAAGTTTTTCTCTGGTAGGAACAGGTCAAGGAGGAGGGTTTTATCACAGCAACAAACAGAAGATGATGATTTTGTTGATGAAGAACATGGTCCTATGGTGGACCACCCCATATGGTACATACGCACCACTGGTCTCCAACAATCAATTATCACTGCCATCACAGTTTGTAAGTATAAAAAAGGTGAAGGCTTGATTGAAGGAACAGAGTGTTCTGTTTGCTTGAGTGAGTTTCAAGAGGATGAGAATCTCAGACTTTTGCCAAAGTGTAACCTTGCTTTCCATTTACCTTGTATTGACACTTGGCTTAGATCACATACCAATTGCCCCATGTGTAGGGCTCCTATTGTTACTAACCCTGCAAGGATTCCATCTATGGAGCCTAATCCTAATGTTTTGGGTTCAAGTTCAGTGGAAAGTGCCAGGATTGAAGTTTTGGAAAATAGTGGGGACACAAGGGAGGATAGTGCTGATGGAGAAGAAGAAGAGCAAGAAGTTGAAGATGGGAGAAGGGTATGTGAAAGTGAGAATTCAGCTTCAGATATGGTAAACATGCAGCCAAGAAGATCAGTGTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTTGCAACTGTTGGAGTAGGATCTCATGGGAATTCAAATAGACAGCAGGTGGAAGAAGTCAATGAACAAATTGTTTCAAAAAGGGTTTCTGGAAATGGGAATTTGGTAGGGAAAGGTAGTTCTTCTTCAAGGACAAGATATCTGCAGAGTGCACCTAGTTCAATGAAGAGGTCAAGATCCTTAAATGGCAAACACTTATTGTCTTGGTATAGCCGCAGCCAGAAGAAGCCTAATGCTCCTCTGAGAAGCTTTTGA 1101 0.4114 MGLHYRKLLSDCDYFCKVEQSCSSDCDDCIKNCKKYYLPSPSPPPDSDNTKTKTSTYLIISFSLVAIAFFVVCCYAIYVKFFSGRNRSRRRVLSQQQTEDDDFVDEEHGPMVDHPIWYIRTTGLQQSIITAITVCKYKKGEGLIEGTECSVCLSEFQEDENLRLLPKCNLAFHLPCIDTWLRSHTNCPMCRAPIVTNPARIPSMEPNPNVLGSSSVESARIEVLENSGDTREDSADGEEEEQEVEDGRRVCESENSASDMVNMQPRRSVSLDSSSAAKINLALATVGVGSHGNSNRQQVEEVNEQIVSKRVSGNGNLVGKGSSSSRTRYLQSAPSSMKRSRSLNGKHLLSWYSRSQKKPNAPLRSF. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05165 366 MobiDBLite consensus disorder prediction 225 259 - -
Seca12g05165 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 198 IPR013083 -
Seca12g05165 366 SUPERFAMILY RING/U-box 143 198 - -
Seca12g05165 366 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Seca12g05165 366 Pfam Ring finger domain 148 191 IPR001841 -
Seca12g05165 366 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 47 214 IPR044675 -
Seca12g05165 366 SMART ring_2 149 190 IPR001841 -
Seca12g05165 366 MobiDBLite consensus disorder prediction 311 366 - -
Seca12g05165 366 SMART FANCL_C_2 145 199 - -
Seca12g05165 366 CDD RING-H2_EL5-like 148 191 - -
Seca12g05165 366 FunFam RING-H2 finger protein ATL54 124 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05165 Seca-Chr12 139887642 139889791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05165 37 238 C3H Transcription Factor Family AT1G72220 47.847 1.45e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05165 - - mtr:11411830 427.943