Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05154 ATGGTTAAGGCTGATAGGTCCTGGTGTCAGCCACAGCATGTGGCTTGGCAACCACCTTATTTGAATTGCTTCAGCATGCTGCCAAAGCCCAGCTTACTTGGTCATCCAGCATATCTAAATTCTAGCACTTGCATCTTTCCTGCTGTCAGTACAGTTCCGGGGCTTGCATCTCCTGCTATCCCAAATCTGAAGACTGAGCTAAGAAATACAAATGAAGTGCAAGGATTCTATCAGTATCCCAATGCAGGATCGAGTTTCAAAGAAACACATATTGGAGGGGCTTTTCAAAATGGAAATACTGCATCATTGCTGAAGAAGTTACTGGTCTTTGATCACTCTTGTAACAAGACGAGGTTGTTTTATGGTCCTGCCCTCCCCCTTGTCCAGAGTTCAAATGTTACTGCTACAAAATTTGCTTATGATGTAAATGGGGAGGGACAGGCAAGTAATATGGGTCAAAAGTATCAGGCCAGGTACAGTTTACCAGAAGAGTCTGTTAATGATCATATAGATATTGAAGAAAGTGAAATGCATGAAGACACAGAGGAAATCAATGCATTGCTTTATTCTGATGATGAAAATGATGAAGAAGATGATGATAATTCTGATGAGGTGACAAGTACAGACCGTTCCCCTTTGGCAACTAAAAGGACTTATGTAATGCAAGAACAATTCGAAGGTGCAGACGAGGAGGTTGCGAGCTCTGATTGGCCTAACAAAAGGCTGAAGTTAATTGATGGTGGCTATAATAGATCATCCCCACCAATGGACGGTGTTAATTTGGTAAAACTAAAGGAAACCTGTGAGTGTGTCAGTGATGCTGAATCAAAGAACTCTAGTGGCTGGGCATATTCTTTTGAGAAAACTAAGGTAGATAATTCAATGGTGGATGATATCAAATTGAAAAGGGATAGGATCCGTGAATCATTGAGAGTTCTTGAGAATTTAATTCCTGGTGCTAAAGGAAAGGAGCCACTGTTAGTCATTGATGGAACTATTGAGTACTTGAAATTTTTGATGTCCCAAACTGGTACACTTGGAGTGAAATATCACTAA 1056 0.4072 MVKADRSWCQPQHVAWQPPYLNCFSMLPKPSLLGHPAYLNSSTCIFPAVSTVPGLASPAIPNLKTELRNTNEVQGFYQYPNAGSSFKETHIGGAFQNGNTASLLKKLLVFDHSCNKTRLFYGPALPLVQSSNVTATKFAYDVNGEGQASNMGQKYQARYSLPEESVNDHIDIEESEMHEDTEEINALLYSDDENDEEDDDNSDEVTSTDRSPLATKRTYVMQEQFEGADEEVASSDWPNKRLKLIDGGYNRSSPPMDGVNLVKLKETCECVSDAESKNSSGWAYSFEKTKVDNSMVDDIKLKRDRIRESLRVLENLIPGAKGKEPLLVIDGTIEYLKFLMSQTGTLGVKYH. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05154 351 PANTHER TRANSCRIPTION FACTOR BHLH145 8 349 IPR037546 -
Seca12g05154 351 MobiDBLite consensus disorder prediction 191 216 - -
Seca12g05154 351 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05154 Seca-Chr12 139784562 139787528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05154 93 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09460 36.508 8.07e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05154 - - gmx:100817942 486.493