Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05153 ATGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATAGAGATTATGAAGATTGATAAAGTAGATGATCTTTCTAGTACTTTCACAAAGCGAAAATATGGCGTTCACAAGAAGGCTTGTGAGTTATCAACACTTTGTGGGGCTGAGGTTGAAATACTCATGTTTTCTCCATGTGGAAGATCATTTTGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTTAGATGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGATCGGTGAACTCAACAAAAAACATGATGCACTTCAAGATCAATTGCATATTGAGAAGACACGTGAGAAAAAACTAAAGGACATATTGAAGACAAGGAATAACGGTGGTTGGTGGGAGGCCAAAGTGCAAGGTCTTAGTTGTGAACATGCTGAGGAAATGGAAGCAAGTCTTCTAGAATTACATAAAAAATTGTCAAATGAACTTTCAATCAAGTGTGGAGGAAATGCTTCTCATGGTATGGTCTCTTCAACTTAA 552 0.3804 MEEGKKTKGKQKIEIMKIDKVDDLSSTFTKRKYGVHKKACELSTLCGAEVEILMFSPCGRSFCYGDPSLRLLTRTILDDEHPLEGVNYDQLVEDHKRSEIGELNKKHDALQDQLHIEKTREKKLKDILKTRNNGGWWEAKVQGLSCEHAEEMEASLLELHKKLSNELSIKCGGNASHGMVSST. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05153 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca12g05153 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca12g05153 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca12g05153 183 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
Seca12g05153 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca12g05153 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
Seca12g05153 183 Gene3D - 22 82 IPR036879 GO:0003677|GO:0046983
Seca12g05153 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca12g05153 183 PANTHER MADS BOX PROTEIN 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05153 Seca-Chr12 139722088 139722639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05153 5 183 Type I MADS-box Gene Family AT5G60440 37.569 8.24e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05153 SRF-TF 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05153 - K12412 gmx:102665718 176.407