Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05152 ATGGAGGAGGGTATAAAAACCAAAGGAAAACAAAAGATAGAGATTAAGAAGATTGATAAAGCAGATGATCTTTCTAGTACTTTGACAAAGCGAAAATATGGTGTTCACAAGAAGGCTTGTGAGTTATCAACACTTTGTGGGGCTGGGGTTGAAATACTCATGTTTTCTCCATGTGGAAGATCATTTTGGTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTTAGATGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGAACGGTGAACTCAACAAAAAACATGATGCACATCAAGATCAATTGCATATTGAGAATGTTAGAACCACAGGAAACACTAGAAGGGGGGGTTGA 390 0.3923 MEEGIKTKGKQKIEIKKIDKADDLSSTLTKRKYGVHKKACELSTLCGAGVEILMFSPCGRSFWYGDPSLRLLTRTILDDEHPLEGVNYDQLVEDHKRSENGELNKKHDAHQDQLHIENVRTTGNTRRGG. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05152 129 PANTHER MADS BOX PROTEIN 10 103 - -
Seca12g05152 129 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca12g05152 129 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca12g05152 129 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca12g05152 129 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca12g05152 129 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca12g05152 129 Gene3D - 22 115 IPR036879 GO:0003677|GO:0046983
Seca12g05152 129 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
Seca12g05152 129 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Seca12g05152 129 CDD MADS 9 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05152 Seca-Chr12 139696105 139696494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05152 7 81 Type I MADS-box Gene Family AT4G36590 44.000 3.81e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05152 SRF-TF 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05152 - K12412 ccaj:109813207 93.9745