Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g05143 | ATGATTCCAGCTTCCATGAACGCCATTCAGTCTTTGAAAATATATACGCTTCCTCATAGGTGTAATATATGTATGGAAAAATTTTATGATCAAGGTGATGATGAAGGTGAAGTGATGGTGTCGCCAATGCCTTGCAATCATGTTTTCCATCATAGTTGTATTGTGCACTGGCTACAAACGAATCATATGTGTCCCTTGTGTCGTTATCCTATGCCTATCACAAACAACTAA | 231 | 0.381 | MIPASMNAIQSLKIYTLPHRCNICMEKFYDQGDDEGEVMVSPMPCNHVFHHSCIVHWLQTNHMCPLCRYPMPITNN. | 77 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g05143 | 76 | SMART | ringv_2 | 20 | 68 | IPR011016 | GO:0008270 | |
| Seca12g05143 | 76 | SMART | ring_2 | 21 | 67 | IPR001841 | - | |
| Seca12g05143 | 76 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 3 | 72 | - | - | |
| Seca12g05143 | 76 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 74 | IPR013083 | - | |
| Seca12g05143 | 76 | SUPERFAMILY | RING/U-box | 19 | 73 | - | - | |
| Seca12g05143 | 76 | ProSiteProfiles | Zinc finger RING-type profile. | 21 | 68 | IPR001841 | - | |
| Seca12g05143 | 76 | Pfam | Ring finger domain | 20 | 68 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g05143 | Seca-Chr12 | 139590386 | 139590616 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g05143 | 16 | 72 | C3H Transcription Factor Family | AT1G74620 | 49.123 | 4.02e-14 | 62.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g05143 | - | - | lang:109350403 | 109.768 |