Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05141 ATGGTTCCTTCAATTTCTGCACGAACAGGACACTACAGTTATACCATGTGGTGTGATTCGCAGCCGCGCCCCATACCGATTCCTCAAGATACATTCAAATTCTGCATCAGAGTTATATCTCACCCCACTGATATGAACGCCAACACAAGACTTAGAGTCTTACTACACCATCCCCAAGAACGCATACGTGTTCAGAACTTCTTCGATGAGGGTCCTCACTTTCTACGTACACTTTTATCTCACCCACAATTTTCCACTGAATATCTCAATCGAATAGTTGATGAGGTCATTCCCAGTGTTTGTCAACTCTTCCCACATGACCAAACTACTTCTTTTGATCCTTCAGTTCAACCCCAAGAGTTCGCTTTGAATTTGGTCATTATTCTCTATCTTGATGTTGATGATGAGCTTGTGGTGGTCGAAGAGTCCTTGCAAGATTTCAGAATGATTCCGGCATCTAAGAAAGTCATCCAGATGTCATTGAAGAAATCAAAGGTCACCAAACAGAATGAGTGTTGTACTATTTGCATGGAAGAGTTTGAAGTTGGTGGCACAATAGAAGGCTACACAATGCCATGCAATCATATGTTTCATCAACCATGTATTGTGCGCTGGCTAGAAACTAGTCATGTGTGCCCATTGTGTCGCTACCCTTTGCCCATTAATGTAGAAAAAATTGTAGAAATTTAG 690 0.4159 MVPSISARTGHYSYTMWCDSQPRPIPIPQDTFKFCIRVISHPTDMNANTRLRVLLHHPQERIRVQNFFDEGPHFLRTLLSHPQFSTEYLNRIVDEVIPSVCQLFPHDQTTSFDPSVQPQEFALNLVIILYLDVDDELVVVEESLQDFRMIPASKKVIQMSLKKSKVTKQNECCTICMEEFEVGGTIEGYTMPCNHMFHQPCIVRWLETSHVCPLCRYPLPINVEKIVEI. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05141 229 SMART ring_2 173 215 IPR001841 -
Seca12g05141 229 Pfam Ring finger domain 173 216 IPR001841 -
Seca12g05141 229 ProSiteProfiles Zinc finger RING-type profile. 173 216 IPR001841 -
Seca12g05141 229 SUPERFAMILY RING/U-box 165 222 - -
Seca12g05141 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 221 IPR013083 -
Seca12g05141 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 65 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05141 Seca-Chr12 139574097 139575000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05141 142 220 C3H Transcription Factor Family AT1G18760 41.975 2.97e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05141 - - ccaj:109804929 147.517