Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05140 ATGAATGACCAACAACAACAACAACGCCCCAAGCTAATGTCCAATGATCGGTTCAAATTCGACATCAATGTTCTTTCTTGCTCATTTGAATTAAACTCTGTTTCATTTGTAAATCTAACAACCTTACTCCAGAACTCCTCTCAAGAAATACCTTGCAAAAGCTTCTTTCTCCCAGAAGGTCAAGATTTTTTGCGGTTCCATTTATCACACCCATACATTCCCTCTGAATCACTTGACCTGATCATACCAAGGATCGTGTCTCAATTTCAACAACTATTTGATCTAATTGATGATCAGATTGATCTTGCGCCTTCTTCGAATTCGGAATATGTACCAAGTGTGTTCTTTTTGACACTGGACATTATTGTGGAACCTGGAACAGAGCGTGCAGTGAGGGAAGAGGTAATTACTAGAATGATTCCTGCATCCACAGAAGCCATCTATTCTTTGAAGGAATGCAAGGTAATGAAACCAAAAGATAACTGTAGTATCTGTATGGAAGAGTTTGGTGATGATGTTGATGGCGTAACGGTCTCTGCAATGCCCTGCAATCATCTATTTCACCAACAATGTATTGTGCAATGGTTACAAACAAATCATGTGTGCCCCTTGTGTCGCTATTCTATGCCCACATATCATGAGGAAACATGTAATATATAA 660 0.3909 MNDQQQQQRPKLMSNDRFKFDINVLSCSFELNSVSFVNLTTLLQNSSQEIPCKSFFLPEGQDFLRFHLSHPYIPSESLDLIIPRIVSQFQQLFDLIDDQIDLAPSSNSEYVPSVFFLTLDIIVEPGTERAVREEVITRMIPASTEAIYSLKECKVMKPKDNCSICMEEFGDDVDGVTVSAMPCNHLFHQQCIVQWLQTNHVCPLCRYSMPTYHEETCNI. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05140 219 SUPERFAMILY RING/U-box 153 212 - -
Seca12g05140 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 212 IPR013083 -
Seca12g05140 219 SMART ring_2 162 205 IPR001841 -
Seca12g05140 219 ProSiteProfiles Zinc finger RING-type profile. 162 206 IPR001841 -
Seca12g05140 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 210 - -
Seca12g05140 219 Pfam Ring finger domain 160 206 IPR001841 -
Seca12g05140 219 CDD RING-H2_PA-TM-RING 162 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05140 Seca-Chr12 139565649 139566308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05140 123 210 C3H Transcription Factor Family AT1G18760 34.066 1.11e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05140 - - gmx:102665306 120.553