Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05135 ATGGACGGTGGAAACAGAGCCGAAGCCGAACGGTGGCTCTACACCGCCAACAAGCTTCTTAGCGCGCGTGACCTTCACGGAGCACGCTCCTTCGCGATCCGTGCCCGCGAATCCGACCCATCCTTCGACGCGTCGGAGCTTCTCTTAACGGTGATCGACACCCTCCTCGCCGGCGAGTCGCGGATCAACGATCACCACCGTGACTGGTACGGGATCCTCCAAATCCTTCGCTACACCACCAACATCGACCACATCGCCGCCCAGTACCGCCGCCTCGCCCTCCTCCTCGACCCTCACCAGAACCCCTTCGCCTTCTCCGGCCACGCGTTCTCTCTCGTCCATGACGCTTGGTCCGTTCTCTCCAACCCTGCCAAGAAGGCCATGTACGACAGCGAGCTCCGATTGCTCACTACCCCTGCCGCTCCGCCGCAGCCCCAGCCAGTGCCGCCGCCTGCGCCACCGCAGCAGCAACAGCATCAATCTCACTCAACACCGAGGAGAAACCCTAGATCGAGGGACGGCGCGACCGAGCCGACTCGGCAGAATCGGAACCCGAGCGAGCCAACCGAGTCGACTCGGCAGACCCGGACGGCGAGTGCTGAGACGGAGAAGGAGGGTAGCGCGAGCTTCTGGACCTCGTGCCCTTACTGTTACGTTCTGTACGAGTACCCCAAGGGGTACGAAGATTGCACCCTGCGGTGCCAGGGTTGCCGTAGGGCGTTTCATGCGGTGGTGATACGGCCACCGCCGTTGAACGGGAAAGATGCTTCCTTTTGCAGTTGGGGATTTTTCCCGTTAGGGTTTTCTGGAAATTGCAAAGATATTAATGGGGCTTCTTCTAATTGGAACCCATTTTCCCCTCTGTTTCCCTGCCCCTTAAAAGGATCATCCAGTAGGAAAAGGAATTGGGTTTACTATGATGATGAGGCTGCTGCAGCGTTTATTGATATTTCTGATCCAAGTGAGGATGATTCTGATGATGGGGACTGGAGGGGTGGGAGGAAAAGGGGTAGGAAGAGGTCAAGGGTTTCTAAGAGGTCTGGTGATGCAAGGAGGGAACCCATTGAGAGACCTAGGAGGGGTGTTGCTGGTGCTGGTAGTGCAGGGCATGGAAATGTTGGTACTAGTGGGGCTGTTGATGCTGCTGGTGCTGGTTCTAGTGCAAGGGCAGAGTCTAGTAAGAAAGCTGCATTGGGTAGTTCCAGGAGGAGGGGTGCAGGGAATCTGGGGAAGTTGGATTTGAATGTGGAGTTCAGTAATGAGGCAGAAGAGCCTTCTCGTGGAGTGCGTGATCGGGAAGGGAATGCAACTGGCAATGCTGAGGATAATATTGAAGGAATTGGGTTTTTTGAGGGGCTTGATGAATTCCTCAGTAGCTTACCCATCCTCAATGTTGTCGGAGATGATAAGGTGAGGAGGTGGTCCACTAGACATAGGAGTGTGGTGATTGTGCGATGA 1458 0.5597 MDGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPSFDASELLLTVIDTLLAGESRINDHHRDWYGILQILRYTTNIDHIAAQYRRLALLLDPHQNPFAFSGHAFSLVHDAWSVLSNPAKKAMYDSELRLLTTPAAPPQPQPVPPPAPPQQQQHQSHSTPRRNPRSRDGATEPTRQNRNPSEPTESTRQTRTASAETEKEGSASFWTSCPYCYVLYEYPKGYEDCTLRCQGCRRAFHAVVIRPPPLNGKDASFCSWGFFPLGFSGNCKDINGASSNWNPFSPLFPCPLKGSSSRKRNWVYYDDEAAAAFIDISDPSEDDSDDGDWRGGRKRGRKRSRVSKRSGDARREPIERPRRGVAGAGSAGHGNVGTSGAVDAAGAGSSARAESSKKAALGSSRRRGAGNLGKLDLNVEFSNEAEEPSRGVRDREGNATGNAEDNIEGIGFFEGLDEFLSSLPILNVVGDDKVRRWSTRHRSVVIVR. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05135 485 MobiDBLite consensus disorder prediction 416 440 - -
Seca12g05135 485 MobiDBLite consensus disorder prediction 178 204 - -
Seca12g05135 485 Gene3D DnaJ domain 62 138 IPR036869 -
Seca12g05135 485 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 354 - -
Seca12g05135 485 MobiDBLite consensus disorder prediction 138 204 - -
Seca12g05135 485 Pfam DnaJ domain 68 130 IPR001623 -
Seca12g05135 485 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Seca12g05135 485 MobiDBLite consensus disorder prediction 417 438 - -
Seca12g05135 485 CDD DnaJ 68 122 IPR001623 -
Seca12g05135 485 SUPERFAMILY Chaperone J-domain 64 134 IPR036869 -
Seca12g05135 485 MobiDBLite consensus disorder prediction 140 156 - -
Seca12g05135 485 ProSiteProfiles dnaJ domain profile. 68 133 IPR001623 -
Seca12g05135 485 SMART dnaj_3 67 125 IPR001623 -
Seca12g05135 485 MobiDBLite consensus disorder prediction 317 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05135 Seca-Chr12 139429088 139434484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05135 8 472 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.822 1.06e-107 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05135 - - cam:101509006 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05135 12 139429088 139434484 Seca6g05098 6 118244557 118246029 PCT