Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05129 ATGACTAGGAAAAGGATACAGATCAAGAAAATTGACAACATAAGTTCAAGGCAGGTGACTTTTTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGATGCAGATATAGCTCTTATGGTCTTTTCTGCAACTAGCAAACTCTTTGAGTATGCTAGTTCAAGTATGCATCAGGTAATTGAAAGGCGCAATCGGCATTCAGCAATTCATAGATTAGACCACCCATCTATTGAGATGCAGGTAGAGAATGACTCCAACGACACGCTGCGCAAGAAAGTAGAAGATAGGACTCATGAGCTGAGGCAGTTGAAGGGGGAAGAGCTGCAAGGATTGACGTTACAAGAACTCCAGAAACTAGAGGAACTGCTCAAAAGAGGTTTGACCAGTGTTTCAAAAGCTAAGGATGAAAAGTTTATGCAAGACATAAGCGCCCTTAAGAGAAAGGGAGTGGAACTGATTGAAGAAAACCAAAAATTGAAACAGGTACCAAGTTTTATACATGGGCAAAGGCAATCATTGGAATCCATTATTAGCAGTTCATCTCATCTTCCAGAAGACCATGGCAGTGACACATCTCTCAAGTTGGGGTTATCTTTACTTAAATAA 624 0.4087 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASSSMHQVIERRNRHSAIHRLDHPSIEMQVENDSNDTLRKKVEDRTHELRQLKGEELQGLTLQELQKLEELLKRGLTSVSKAKDEKFMQDISALKRKGVELIEENQKLKQVPSFIHGQRQSLESIISSSSHLPEDHGSDTSLKLGLSLLK. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05129 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca12g05129 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 ProSiteProfiles K-box domain profile. 85 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g05129 207 Pfam K-box region 92 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g05129 207 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Seca12g05129 207 Coils Coil 92 112 - -
Seca12g05129 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 Coils Coil 148 168 - -
Seca12g05129 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Seca12g05129 207 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Seca12g05129 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g05129 207 Coils Coil 122 142 - -
Seca12g05129 207 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05129 Seca-Chr12 139329395 139337787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05129 1 203 MADS-box Gene Family AT2G22540 47.458 6.28e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca12g05129 K-box 5.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05129 - - aprc:113860188 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05129 12 139329395 139337787 Seca6g05097 6 118227003 118241031 PCT