Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05114 ATGCCCAATAGCGTCCCCACCTCTGACTTTTTGCTGCAGCAAAACTGTCAGGACATTGGGGGAATAAGTGATCCTTCCCGCAGTTCAAAGCTTTCACGGAGAATTGCATCACTTGTTAGGTTTCGTGAAAAAAGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGCATTCAAATATCCTGGCTTTCAAAATAAGAATTGGGGTTTTACTTTTGAAAGTACCATGTTCTGCTTGTCCTCTGGACATAAAGGCTGGTGCTCTTAAGATTGATAATATTTGGTTATCTAATAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGATTACAAATCTCCTGCTGAAAACTTGGATTCTAGCAATGGTACTCCTTGCCCAGAATCTATTGAACGTAGATGCCAACATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCGGCTGGTCCGAGATCACTGTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTAGAACAAAATGAACCGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCTGACCGGGATGAGGGAAGCCCTGAGGAAACTAAGCCTGTGCCAGTGGATTCCAGACAGCCACCTGAAAAGAAAAATGAGCAGTATATACTTGAAACTGCTGAAGCAGTTACTGACAACTTGCCTATACAAATGGAGAATCATACTCTTAGTCTGCACGAGCAGGATGCTATTGAGGATCTTGCTGATGCTTCAGGGACCGAATTCGAGATTCCTGCAGGTTTTGATGATCAGGTTGATATTGATGATTCCAACATGAGGACCTACTGGCTGTGA 909 0.429 MPNSVPTSDFLLQQNCQDIGGISDPSRSSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEHSNILAFKIRIGVLLLKVPCSACPLDIKAGALKIDNIWLSNRMHRKNGQFASLKEDYKSPAENLDSSNGTPCPESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIALEQNEPDTSADIKPSTTEPENSCADRDEGSPEETKPVPVDSRQPPEKKNEQYILETAEAVTDNLPIQMENHTLSLHEQDAIEDLADASGTEFEIPAGFDDQVDIDDSNMRTYWL. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05114 302 SMART GATA_3 135 188 IPR000679 GO:0006355|GO:0043565
Seca12g05114 302 MobiDBLite consensus disorder prediction 191 235 - -
Seca12g05114 302 CDD ZnF_GATA 140 183 IPR000679 GO:0006355|GO:0043565
Seca12g05114 302 Pfam CCT motif 34 61 IPR010402 GO:0005515
Seca12g05114 302 ProSiteProfiles GATA-type zinc finger domain profile. 135 192 IPR000679 GO:0006355|GO:0043565
Seca12g05114 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 188 - -
Seca12g05114 302 MobiDBLite consensus disorder prediction 208 235 - -
Seca12g05114 302 ProSitePatterns GATA-type zinc finger domain. 141 168 IPR000679 GO:0006355|GO:0043565
Seca12g05114 302 Gene3D - 135 193 IPR013088 GO:0006355|GO:0008270
Seca12g05114 302 PANTHER GATA TRANSCRIPTION FACTOR 28 1 281 IPR045280 GO:0006355
Seca12g05114 302 Pfam GATA zinc finger 141 177 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05114 Seca-Chr12 139142341 139149030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05114 25 184 Tify Gene Family AT1G51600 47.904 3.02e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca12g05114 GATA 2.9e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05114 - - gmx:102669848 430.639