Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05106 ATGTTCAACATCAGGTTCCTGTTGTGGCCTTACATTAAGCTATTGATCATCTTCTGCCTCATCATACCAGACTTTGGACGGGCGTCATATATCTATAATAAATTTATTCGCTCATGCATCTCCATGAAACCACAAACAGTCATATGCAGGTTAAAAAACTGGAGGAAGTATTTTGTCCAGAAGGAAAACTTTTTACTGCATGCAGAGAGATATATAAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTCTAAACCTGATGCAGAAGCAACAAATTCAATGAGAGATACTGATAGTAAAGACATGCAACAGAACACAACATATAAACCTGATGCAGAAGCAACAAATGCAATTAGAACTACTGATAGTAAAGAAATGAAACAGTACTTACTGAAAGAGCATCGGGTGCAGACAAATGGAAAAGGGCTCCAAACACAGCACAAAGACATCAAAGATTTGGAGATTATTGAGAAAAAAGAAATTCCTGCAGGCAAGCAAGATATTCCTGTGGTGCCTAACCTTGTGCCAAGTCAGAACACTTTATCAGCCATGGTGGAAACTAAAGGAATAGTGGGGAAAGACACAGCTTCTGGTGGAGAGCTTCCTCAGAGTTCTACACATAAGGAAGTGCAGAAAGAATGGACTTGCGCTTTGTGTCAATTCACAACAACAAGTGAGAAAACCTTGAATATCCACTTGCAAGGGAAGAAACACAGGGCTACTTGTGAAGCTTTGAAAGCAAAGAATCAACCTACTTGTGTAGCTTTGAAAGCAAAGAATCAACCTATTTCACAGAAGCTGCAATTCTATCTGCCTAAGGAGGAATTGAAACAGAAGAACATTGTCAATCAGCTAGATTCTCATTCCAATACCAAGACTGGAGAGAGTATTGTGAACAACGGGTTGAAGGGAATAGTAGTCATGGATCAAAAGAAGGTGCAAGAACTGCAAAAGAACCTGGCTGAACCTGTTAGGATGAATCATTCCAAATTAAGATGTGAAATCTGTAATCTTAACATCACTAGTGAGTCTGACATGGCCTCTCACTTAAATGGGAGGAAGCACTTGGCTAATATTCAAATTCTACAGAATGACAATAAGGACATTGCTTGA 1134 0.3915 MFNIRFLLWPYIKLLIIFCLIIPDFGRASYIYNKFIRSCISMKPQTVICRLKNWRKYFVQKENFLLHAERYIKENGTEALEKLIASKNTMSKPDAEATNSMRDTDSKDMQQNTTYKPDAEATNAIRTTDSKEMKQYLLKEHRVQTNGKGLQTQHKDIKDLEIIEKKEIPAGKQDIPVVPNLVPSQNTLSAMVETKGIVGKDTASGGELPQSSTHKEVQKEWTCALCQFTTTSEKTLNIHLQGKKHRATCEALKAKNQPTCVALKAKNQPISQKLQFYLPKEELKQKNIVNQLDSHSNTKTGESIVNNGLKGIVVMDQKKVQELQKNLAEPVRMNHSKLRCEICNLNITSESDMASHLNGRKHLANIQILQNDNKDIA. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05106 377 Pfam Zinc-finger of C2H2 type 221 245 - -
Seca12g05106 377 Pfam Zinc-finger of C2H2 type 339 362 - -
Seca12g05106 377 ProSitePatterns Zinc finger C2H2 type domain signature. 340 362 IPR013087 -
Seca12g05106 377 SUPERFAMILY beta-beta-alpha zinc fingers 211 257 IPR036236 -
Seca12g05106 377 Gene3D Classic Zinc Finger 206 251 - -
Seca12g05106 377 Gene3D Classic Zinc Finger 315 368 - -
Seca12g05106 377 PANTHER OS06G0651300 PROTEIN-RELATED 200 374 - -
Seca12g05106 377 SMART ZnF_U1_5 218 252 IPR003604 GO:0003676|GO:0008270
Seca12g05106 377 SMART ZnF_U1_5 335 369 IPR003604 GO:0003676|GO:0008270
Seca12g05106 377 SUPERFAMILY beta-beta-alpha zinc fingers 330 369 IPR036236 -
Seca12g05106 377 SMART c2h2final6 338 362 IPR013087 -
Seca12g05106 377 SMART c2h2final6 221 245 IPR013087 -
Seca12g05106 377 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05106 Seca-Chr12 138985125 138989465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05106 220 377 C2H2 Transcription Factor Family AT5G61190 29.586 4.98e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05106 - - gmx:100812073 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05106 12 138985125 138989465 Seca12g05106 12 138985125 138989465 ECH