Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05102 ATGCCTAATGCCACAAAAGGAGGTTCTTTTGGTTTGACATTGGATAATCAAAGATTGAACTCCACTGACAATCCATTTGTAGCTGTGGAGTTTGATATCTATCACAACAACTATGATCCGCCCAAGGAACATGCTGGAATCGACATCAACTCTGTGAGATCCGTTGCTAATGTGACATGGTTGGCTGATATCAAGGAAGGGAAACTCAATGAGGCATGGATCAGTTACAATTCTAGTTCACAAAATTTAAGTATCATATTCACTGGTTTTGAAACTATCAATAACAATGGGACCAGTCAGACCACCACCACCACCACCACTGTGCAGCAACATCTATCTGCCATAGTTGATCTGAGACTTTATCTGCCTGAATTGGTTACTGTAGGCTTCTCAGCTGCCACAGGAAATGCAACTGCTATACATAGTATCCAATCATGGGATTTTAGCTCAAGTTTGGAAGCACAAGGAAACATAACAAACACAGCTCCTAGTCAAAAGAAAAAGTCCAAGACAGGATTGGCAGTGGGATTGGGTATTGGTGGATTTATTTTAATTGTTGTGGTGGGTTTGATTTCAATTGGGTATTGGAAGAAGAGGAAGAAAGAAACTGAAGAGGAAGATCATGATTTTGAAGAGTACATGGGTGAGGATCTTGGAAGGGGGACAGGACCCAAGAAGTATTCATATGCAGAATTAGAAAATGCATCTAATAATTTCAAAGATGAGCATAAGCTAGGTCAGGGAGGATTTGGAAGTGTTTATAGGGGTTATCTTAAAGACATAAAGTCTTATGTTGCTATTAAGAGGGTGTCAGAAGGTTCTGGTCAAGGGATTAAGGAGTTTGCATCTGAAGTAAGAATTATTAGCCGGTTAAGGCATCGAAATCTAGTGCAATTGATTGGTTGGTGTCATGAAAGAAAAAAGCTCTTGCTTGTCTATGAGTACATGCCAAATGGAAGCTTGGATGTTCATCTTTTCAAGAAACAAAGCTTGTTGAAATGGGCAGTTAGATATACAATAGCTCGAGGCTTGGCTTCTGCATTGCTATACTTGCATGAAGAATGGGAACAGTGTGTTGTACATAGAGACATAAAATCAAGCAACATAATGCTAGATGCAGAGTTCAATGCAAAACTTGGGGATTTTGGTTTAGCAAGGTTTGTTGATCATGCAAAAGGTGCACAAACTACAGCTTTAGCTGGGACTATGGGCTACATGGCACCTGAATGTGTTATTACGGGCAGGGCTAGTAAGGAATCAGATGTCTACAGTTTTGGAGTTGTTGCTTTAGAGATAGCTTGTGGAAGAAAATCCATATGCCCTAAGGCCCAGGAAAATGAAATAAATATTGTGGAGTGGGTCTGGGATCTCTATGGAAAAGGGAAAATTCTTGAAGCAGCAGATCCAAGACTAGGTGGAGATTTTGAAGAGGAGAAAATAAAATGCTTGATGATTGTTGGTCTTTGGTGTGCTCACCCTGACCATACTAATAGGCCTTCAATGAGGCAAGCAATTCAAGTGCTTAACTTTGAAGCTCCCCTACCCAATCTTCCGTCAAGTCTTCCTGTACCAACATATGCTGAGCGCCCACTGAACATATCCCTAACTTCATTCAGCACAAATGCTTCTGAGGAAGGTCAGACCCAGAACATAAGCTTTAGTACTTCAAACACAAACTCCTCTGGGTTCACCTCAACTTCTAATGATATTTCACCCTCTATTTCGAAAACAATGTATGTCCAGTTTCCCAATCTTAATTTCCCCTATCGTTTCTTGTTATCCATTTTCTTAGTACTCTTGATTATCCCATATGCATCCTCTTTATCCTTTAACTTCACTAGCTTTAATCCTAATGACAAGTACATAATATATGAGGGAGCGGCAAATCCTACAACATCAGGTATCCAACTTACTATAAACCAGCGAGGGAAGCTCATGAATGGAAGTATTGGTCGAGCCACATATTACGAACCTATCCAACTTTGGGACAAAACCACTAGGAATCTCACAGATTTCACAACCCATTTCACTTTCACCATAGATTCACGGAATCGAAATGTATATGGAGATGGGATTGCATTCTTCCTTGCCCCTGCAGGTTCAAAGATGCCTAATGCCACAAAAGGAGGTTCTTTTGGTCTGACATTGGATAATCAAAGATTGAACTCCACTGACAATCCATTTGTTGCTGTGGAGTTTGATATCTATCACAACAGTTATGATCCGCCCAAGGAACATGCTGGAATAGATATCAACTCTGTGAGATCTGTTGCTAATGTGACATGGTTAGCTGATATCAAGGAAGGGAAACTCAATGAGGCATGGATAAGTTACAATTCTAGTTCACAAAATTTAAGTATCATATTCACTGGTTTTAACAATGCCACCTCCACCATCCTGCAGCAACATCTATCTGCCATAGTTGATCTGAGACTTTATCTGCCTGAATTGGTTACTGTTGGCTTCTCAGCTGCCACAGGAAATGCAACTGCTATACATAGTATCCAATCATGGGATTTTAGCTCAACTTTGGGAGCACAAGGAAACATAACAAACACAGGGTTGTGGAAGAAGAGGAAGAAAGGAACTAAAGAGGAAGATCATGATTTTGAAGAGTACATGGGTGAGGATCTTGGAAGGGGGACAGGACCCCGGAAGTATTCATATGCAGAATTAGCAAATGCATCTAATAATTTCAAAGATGAGCATAAACTAGGTCAGGGAGGATTTGGAGGTGTTTATAGGGGTTATCTTAAAGACATAAAGTCTTATGTTGCTATTAAGAGGGTGTCAGAAGGTTCTGGTCAAGGGATTAAGGAGTTTGCATCTGAAGTAAGAATTATTAGCCGGTTAAGGCATCGAAATCTGGTGCAATTGATTGGTTGGTGTCATGAAAGAAAAAAGCTCTTGCTTGTGTATGAGTACATGCCAAATGGAAGCTTAGATGTTCATCTTTTCAAGAAACAAAGCTTGTTGAAATGGGCAGTGAGAAATACCATAGCTCGAGGCTTGGCTTCTGCATTGCTATACTTGCATGAAGAATGGGAACAGTGTGTTGTACACAGAGACATAAAATCAAGCAACATAATGCTAGATGCAGAGATAACAATAACACTCTTGCTTGTTGCAACATCTCGTGCAGCTCCATTAGCGTTCAACTATCAGCATCTGGGTACCACTCCAAATGCCTTCAATTTTTCAGCAGATGTCTATCAAGACAAAGAAGTCCTCCAACTCACCAGGTCCAAGAGAGACAGCCTTGGCAGAGTCATATATTCCAAACAGCTGCATCTTTGGGACAAGAATTCAGGTAAAGTCACAGACTTTAGTACTAGTTTTTCCTTTACCATAAACACGCCAAACAAAACCCATCATGGGGATGGCATCACCTTCTATCTGGCACAGCCTAACTTTCCATTACCAGTTCCAAGAGATGGAAGTGGTATTGGTCTAGTGAGCCGTGATCAATTGAATGAACCAAATTACACAAAAGAACATCCATTTGTAGCAGTTGAATTTGATACCTTTGTCAATGATTGGGATCCTAGATATGACCATGTGGGAATTGATATTAATTCTATTAGCACTGCTTACACTACACAATGGTTCACTAGTATGGATGAGAGAGGATATGATGCTGATATTAGTTACAATTCTAGTTCAAACAATTTAAGTGTCACCTTCACTGGATATCAGGATAACATCACAGTTAAACAGCACTTGTACTATGTAGTCAGTCTGAGAGATGTTTTACCTGATTGGGTTGAATTTGGCTTCTCTTCAGCAACCGGGGATTTTTTTGAGGAACATACTCTTAGCTCATGGTCCTTCAACTCTAGTTTAGACTTTGAAGCAGACAAGGGTGAAAGCAAAACAGGGTTGGTGATAGGTCTTAGCGTTGGTGGAGGGGTTTTAATTGGTGTTTTGGTGCTAGCTTTCCTTGTAACATGGAAGCTGAGGAAAAGAGGCATGAGGGATGATTTGCAATTTGATCTTGCTATGGATAATGATTTTGAAAGAAGCTCAATACCTAGGAAGTTTTCCTATGAAGAACTTGCTAGAGCAACTAATAACTTTGCAAAGGAACAGAAAATTGGACAGGGAGGTTTTGGTGGAGTCTATAAGGGATTTATAAGAGACTTGAACACTCATGTTGCCATTAAGAAGGTGTCTCAGGGATCTAAACAAGGGGTGAAGGAGTATGCATCTGAAGTAAAGATCATTAGTCAGTTGAGGCATAAGAATTTGGTTCAACTTTATGGGTGGTGTCACAGGCAGAATGACCTGTTACTGATTTATGAGTTTGTGGAAAACGGGAGTTTAGATTCTTATCTGTTTAAAGGAAAAGGACTACTGAAATGGACAGTAAGATATAATATTGCTAGAGGCCTGGCCTCAGCATTATTGTACCTTCATGAAGAGTGGGAGAAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCTAATTTTAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGAACCATGGGACAGAATCAAAGACAACAAGTTTAGCAGGAACATTTGGATATCTTTCTCCTGAAGCTGCTACCAGAGGCAAGGCTAGTAAAGAGTCTGATGTATATAGTTTTGGAGTTGTTGCTTTGGAGATAGCCTGTGGTAGAAAGGTAATTGAACCTAATCTCAATGAAGAACACATCCATTTGGTGGATTGGGTTTGGGAACTCTATAGCAAAGGTGATCTCCTTAAAGCAGCTGATTCAAGATTGTATGGAGAACTTCATGAGAAGGAAGTAGAGAGGTTAATGATTGTTGGCCTTTGGTGTACTCACATAGATTACATTCAGAGGCCTATGATTAGGCAAGCTGTTCAGGTGCTTAATTTTGAAGCTCCACTACCTACTCTCCCATCACAGGTGCCTCCCTCTACCTATAATAGATCTTTGAGCTCTATGGCCTCTGGGACTCCTGCATTTGGGAATAACCAATCTGGACCCTCAACTTCTAGCAATAGCTCCTTCACTGGATCCTCACAATCAAGCAAAACTTTTGAAGTCATCTCTCCTTCAGCTGCACTTCTACATACATGCTGA 5097 0.4034 MPNATKGGSFGLTLDNQRLNSTDNPFVAVEFDIYHNNYDPPKEHAGIDINSVRSVANVTWLADIKEGKLNEAWISYNSSSQNLSIIFTGFETINNNGTSQTTTTTTTVQQHLSAIVDLRLYLPELVTVGFSAATGNATAIHSIQSWDFSSSLEAQGNITNTAPSQKKKSKTGLAVGLGIGGFILIVVVGLISIGYWKKRKKETEEEDHDFEEYMGEDLGRGTGPKKYSYAELENASNNFKDEHKLGQGGFGSVYRGYLKDIKSYVAIKRVSEGSGQGIKEFASEVRIISRLRHRNLVQLIGWCHERKKLLLVYEYMPNGSLDVHLFKKQSLLKWAVRYTIARGLASALLYLHEEWEQCVVHRDIKSSNIMLDAEFNAKLGDFGLARFVDHAKGAQTTALAGTMGYMAPECVITGRASKESDVYSFGVVALEIACGRKSICPKAQENEINIVEWVWDLYGKGKILEAADPRLGGDFEEEKIKCLMIVGLWCAHPDHTNRPSMRQAIQVLNFEAPLPNLPSSLPVPTYAERPLNISLTSFSTNASEEGQTQNISFSTSNTNSSGFTSTSNDISPSISKTMYVQFPNLNFPYRFLLSIFLVLLIIPYASSLSFNFTSFNPNDKYIIYEGAANPTTSGIQLTINQRGKLMNGSIGRATYYEPIQLWDKTTRNLTDFTTHFTFTIDSRNRNVYGDGIAFFLAPAGSKMPNATKGGSFGLTLDNQRLNSTDNPFVAVEFDIYHNSYDPPKEHAGIDINSVRSVANVTWLADIKEGKLNEAWISYNSSSQNLSIIFTGFNNATSTILQQHLSAIVDLRLYLPELVTVGFSAATGNATAIHSIQSWDFSSTLGAQGNITNTGLWKKRKKGTKEEDHDFEEYMGEDLGRGTGPRKYSYAELANASNNFKDEHKLGQGGFGGVYRGYLKDIKSYVAIKRVSEGSGQGIKEFASEVRIISRLRHRNLVQLIGWCHERKKLLLVYEYMPNGSLDVHLFKKQSLLKWAVRNTIARGLASALLYLHEEWEQCVVHRDIKSSNIMLDAEITITLLLVATSRAAPLAFNYQHLGTTPNAFNFSADVYQDKEVLQLTRSKRDSLGRVIYSKQLHLWDKNSGKVTDFSTSFSFTINTPNKTHHGDGITFYLAQPNFPLPVPRDGSGIGLVSRDQLNEPNYTKEHPFVAVEFDTFVNDWDPRYDHVGIDINSISTAYTTQWFTSMDERGYDADISYNSSSNNLSVTFTGYQDNITVKQHLYYVVSLRDVLPDWVEFGFSSATGDFFEEHTLSSWSFNSSLDFEADKGESKTGLVIGLSVGGGVLIGVLVLAFLVTWKLRKRGMRDDLQFDLAMDNDFERSSIPRKFSYEELARATNNFAKEQKIGQGGFGGVYKGFIRDLNTHVAIKKVSQGSKQGVKEYASEVKIISQLRHKNLVQLYGWCHRQNDLLLIYEFVENGSLDSYLFKGKGLLKWTVRYNIARGLASALLYLHEEWEKCVLHRDIKSSNVMLDSNFNAKLGDFGLARLMNHGTESKTTSLAGTFGYLSPEAATRGKASKESDVYSFGVVALEIACGRKVIEPNLNEEHIHLVDWVWELYSKGDLLKAADSRLYGELHEKEVERLMIVGLWCTHIDYIQRPMIRQAVQVLNFEAPLPTLPSQVPPSTYNRSLSSMASGTPAFGNNQSGPSTSSNSSFTGSSQSSKTFEVISPSAALLHTC. 1699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05102 1698 CDD lectin_legume_LecRK_Arcelin_ConA 608 844 IPR001220 GO:0030246
Seca12g05102 1698 CDD lectin_legume_LecRK_Arcelin_ConA 1050 1281 IPR001220 GO:0030246
Seca12g05102 1698 Gene3D Transferase(Phosphotransferase) domain 1 980 1040 - -
Seca12g05102 1698 MobiDBLite consensus disorder prediction 1645 1681 - -
Seca12g05102 1698 ProSitePatterns Protein kinases ATP-binding region signature. 1365 1389 IPR017441 GO:0005524
Seca12g05102 1698 ProSitePatterns Legume lectins alpha-chain signature. 1251 1260 IPR000985 -
Seca12g05102 1698 CDD STKc_IRAK 1365 1629 - -
Seca12g05102 1698 SUPERFAMILY Concanavalin A-like lectins/glucanases 605 845 IPR013320 -
Seca12g05102 1698 FunFam L-type lectin-domain containing receptor kinase IX.1 224 315 - -
Seca12g05102 1698 ProSiteProfiles Protein kinase domain profile. 239 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1019 1031 IPR008271 GO:0004672|GO:0006468
Seca12g05102 1698 FunFam Lectin-domain containing receptor kinase A4.3 1436 1648 - -
Seca12g05102 1698 FunFam L-type lectin-domain containing receptor kinase IX.1 1344 1435 - -
Seca12g05102 1698 CDD STKc_IRAK 245 509 - -
Seca12g05102 1698 SUPERFAMILY Concanavalin A-like lectins/glucanases 1050 1281 IPR013320 -
Seca12g05102 1698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Seca12g05102 1698 ProSiteProfiles Protein kinase domain profile. 899 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 ProSiteProfiles Protein kinase domain profile. 1359 1637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 SUPERFAMILY Protein kinase-like (PK-like) 223 529 IPR011009 -
Seca12g05102 1698 Gene3D Transferase(Phosphotransferase) domain 1 1436 1649 - -
Seca12g05102 1698 Gene3D Transferase(Phosphotransferase) domain 1 316 529 - -
Seca12g05102 1698 SUPERFAMILY Protein kinase-like (PK-like) 1342 1651 IPR011009 -
Seca12g05102 1698 FunFam Lectin-domain containing receptor kinase A4.3 316 528 - -
Seca12g05102 1698 FunFam L-type lectin-domain containing receptor kinase IX.1 884 975 - -
Seca12g05102 1698 SMART serkin_6 1359 1628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 SMART serkin_6 239 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 SMART serkin_6 899 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 305 IPR013320 -
Seca12g05102 1698 Pfam Protein kinase domain 1360 1625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 Pfam Protein kinase domain 899 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 Pfam Protein kinase domain 239 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05102 1698 Gene3D - 1 156 - -
Seca12g05102 1698 SUPERFAMILY Protein kinase-like (PK-like) 882 1039 IPR011009 -
Seca12g05102 1698 ProSitePatterns Legume lectins beta-chain signature. 1169 1175 IPR019825 -
Seca12g05102 1698 Pfam Legume lectin domain 2 158 IPR001220 GO:0030246
Seca12g05102 1698 Pfam Legume lectin domain 1051 1289 IPR001220 GO:0030246
Seca12g05102 1698 Pfam Legume lectin domain 607 852 IPR001220 GO:0030246
Seca12g05102 1698 Gene3D - 1049 1295 - -
Seca12g05102 1698 Gene3D - 605 853 - -
Seca12g05102 1698 ProSitePatterns Protein kinases ATP-binding region signature. 905 928 IPR017441 GO:0005524
Seca12g05102 1698 Gene3D Phosphorylase Kinase; domain 1 884 975 - -
Seca12g05102 1698 Gene3D Phosphorylase Kinase; domain 1 224 315 - -
Seca12g05102 1698 Gene3D Phosphorylase Kinase; domain 1 1344 1435 - -
Seca12g05102 1698 FunFam L-type lectin-domain containing receptor kinase IX.1 606 853 - -
Seca12g05102 1698 FunFam L-type lectin-domain containing receptor kinase IX.1 1048 1290 - -
Seca12g05102 1698 ProSitePatterns Protein kinases ATP-binding region signature. 245 268 IPR017441 GO:0005524
Seca12g05102 1698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1479 1491 IPR008271 GO:0004672|GO:0006468
Seca12g05102 1698 PANTHER - 1073 1638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05102 Seca-Chr12 138830364 138848611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05102 1 526 Receptor kinase-like Gene Family AT5G10530 51.024 6.55e-169 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca12g05102 Pkinase 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05102 - - cam:101491058 1168.68