Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05100 ATGGACCAAAATAACAATTACAGTGTTGGGAGAGTCACAAGTTATGGTCATATGCACCTCTGGGATATGAACTCTGGAAAGCTCACTGATTTCACTACCAAATTTTCCTTTGTTATTTTTTCAGATGAGAATGATTATGGAGATGGAATGGCCTTCTTTCTTGCAGATCCAAATCTCCCACTTTTGAAGGATATTAAAGAAGGAGGTGGTCTTGGCCTTGTGGATGGAAGCCAAGTGCTTAAGTCAACAAAACACTCATTTGTGGCAGTAGAATTTGACACCTTCAATAATCCATCATGGGACCCTCCTAAACAAGGTACTCATGTAGGCTTGAATTTCAACTCTATGAGGTCTAATATAACTAAGCCATGGTTGACAGATATTCAAGAATGGAGAATTTACAATTGCAGCATTGAGTACAATTCAAGCACTCTTAATTTAAGTGTTTCATTCACTATGTACAGTGATGGTAAACCAGCTGAAGAATACATATCATATAAGGTTGACTTGAGAGATCATTTACCAGAGAGGGTTATTTTTGGCTTCTCTGCTGCAACAGGAAGATTGTATGAGGTGCATACTCTGAGGTCATGGTCATTTAGTTCAAGTCTACTAAGTGATGAGAACATAAATCAGATAACACCAATTGCAGCAGCACCAATCCCCAATCCTGTTTCTGGAAAAGAAAACAAGATAGGATTGTGGGTGGGACTTGGAATTGGTATAGGTTTGGCTGTGATTTTGTCAGGGATGATTTTTACTTTATTATGGAAGAGGAGTAGAGGGGGAAGAGAAGAGTTTGGTTTTGATCTCAACATGGATGTTGAATTCCAAAAGGGCACTGGACCTAAGAGATTTTCCTATAATGAACTAGTAAGTGCAACAAACAAATTTGCAGAGTCAGAGAAGCTGGGGCAAGGTGGTTTTGGTGGTGTGTATAAAGGTTATTTGAAAGAGTTAAACTCCAATGTTGCTATCAAGAGGATATCAAGAGAGTCAAGACAGGGGATACAAGAATATGCAACTGAAGTGAAGGTCATAAGCCAATTGAGACATAGGAATCTAGTACAACTTATTGGTTGGTGTCACAAAAAGAATGATTTCCTTCTCATATATGAGTTCATGCCAAATGGAAGCTTAGATTCCCATTTACACCATGGGAAAAGCTTTTTGACATGGAAAGTGAGGTATAACATAGCTCTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAATGGGAGCAGTGTGTGATTCACAGGGACATTAAATCAAGCAACATTATGTTGGACTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTAGCTAGGCTGGTGGATCATGAGAAAGGGTCACAAACCACACTTATAGCTGGGACAAGGGGTTATATTGCACCTGAATATTTCACATCAGGAAAGGCTACTAAGGAATCTGATATATACAGCTTTGGGGTTGTGTTATTAGAGATAGCTAGTGGAAGGAAAGCCATTGACCAAGAAGGCAGGGAGGGTCAAATAACTGTAGTTGAGTGGGTTTGGGAGCTCTATGGATTGGGAAAGTTACTTGAAGTAGCTGATCCAAAGTTATGTGGAGCATTTGATGAGCAACAAATGGAACGGTTAGTGGTTGTTGGGCTTTGGTGTGTTCATCCAGATTATTCATTCAGGCCTTCAATAAGGCAAGTGATTCACGTGCTTAAATTTGAATTTTCTTTACCAATTCTGCCACAAAAGATGCCTGTGCCAACCTATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCTTCCTCCTTTTGGACTAAAAATTCTGACTCTTCTATCAGACTCACTGGGAACCCATGGGATCCAAATAATACCGGTGCTGGTCGAGTCACAATTCCTAAACTTATCCATCTTTGGGACAAGACCTCAAATGAAGTATATGACTTCACTACCAAGTTTTCCTTTCTTATTTCATCAAATCTGTCTCTTCATGGAGATGGTTTGGCATTCTTCCTAGCTAGCCCAAGTCTCCCAAAAGCAAATGATATTGGAGGTGGTGGAGGCCTTGGTCTTTTGCCTGCAGCTAACCTTGTCCCAATTGGGTATTCATTTGTGGCAGTGGAGTTTGACACTTTCAAAAATGATTGGGACCCAGATGGCTCACATGTAGGAGTGGATATCAATTCTATGAGTTCTAACACATATACTGAATGGTCCACTGATATTTCAGAAAGGGTAGTTTATAATTGTTGTATTGAGTACAATTCTAGAAATAATTATCTAAACGTTTCTTTCACTGGATTCACATTTAGTGACGGGCCAGTACCACAGAACCTTCTTTACCTCATTGATCTGAGTGAGAACTTACCAGAGGATGTTATTGTTGGCATATCAGCTGCAAGAGGATTTTACAATGAGGAACATACTCTTCTGTCATGGTTTTTTAGTACAAGCCAACCAAACCATACCCTGCTGTCATGGTCATTTAGTACAAGTATTGCTGATCCTAAGAAGGAAAGGAAGAACTTAAAATTGTTAGAGGGAATAGGAGTTGGTGTAGGTTTGCCTTTGAGTTTATTAGGATTGGTCCACATTTTGTTGTGGAAGATGAATAGAGGAAAAGAAGAAGAACCAAATTCAGAAACCGCTTCTGAACTGGATATGGATGATGATTTCGAAATGATTGTCGGACCTAAGAAGATTTGTTATTATGAATTGTTAACTGCAACAAACAACTTTGAAGAGAAACAGAAGCTTGGACAAGGTGGTTTTGGTGGAGTTTATAAAGGTTATTTGACAGGTTCAAACTCATATGCTGCTATAAAGAGGATATCAGCAAATTCAAGACAGGGTATAAAGCAATACGCAGCAGAAGTGAATATCATTAGCCAATTGAGGCATAGGAATTTGGTAAAACTCACAGGTTGGTGCCACAAGAAGAATGATCTCCTACTGATATATGAGTACATGCCAAATGGCAGCTTAGATTCTCATCTTTTTGGTGGAGAAAGCATCTTGTCGTGGCAAGTGAGATACAACATAGCTCTAGGCTTGACCGCATCATTGCATTACCTACAAGAAGAATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAATGCTAAGCTTGGGGATTTTGGCCTAGCTAGGCTGGTGGATCCAGATAAAGGGTCACAAACCACAGCTGTGGCTGGGACCATGGGTTATCTAGCCCCTGAATATATGAACTCCGGCAAGTGTCGAAAGGAATCTGACATATTCAGTTTTGGGGTTGTTTTGTTGGAGTTAGCCAGTGGAAGAAGAGTCATTCACCACCAAGACATGGAGGGTGAAGTATCATTAGTTGAGTGGGTGTGGGAGCTCTATGGATTGAGAAATCTCCTTGCAGCAGCAGACCCAAAGCTTTGTGGGGTATTTGATGTGCAGCAAATGGAACGTTTACTGGTTGTTGGCCTTTGGTGTGCTAATCCAGATTGCAAATCTAGGCCCTCTATAAAGCAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTACCAATTCTTCCACAAATGGTCCCTGTGTTAGCCTATTTCCCTCCAACAACAAGTTATGCAAGAAGGACCCTTCTGTTCCTCCTGGTATTCCCTCTTGCAAACACTCAGCCTGTGTCTTTTGATTACCCCAACTTCAGTAAAGCTGATGTAATAAAACTTCTAAAGCTGGAAGGAGATGCTTCTGTTTCAGATTCCACCATCCAACTCACAATCAACCCTGAGGACCAAAACAGCAACTGGACCGGGAGTGTTGGACGAGTCATAAGTCCCAAACCTATTCATCTTTGGAACAAGAGCTCAAATGAACTAAAAGATTTCACTACCCACTTTTCCTTTGTTATTTTCTCAAATCAAGGTCCTTCTTATGGAGATGGTTTGACATTCTTCCTAGCAAGCCCAAATCTCACAAACGCAAATGACACAACAGGGCTAAAAGCAGGAGGCATTGGCATTGGTCGTGTGGATAATAACCAAACACTTCTCCAAACAGAGTACCAATTTGTTGCAGTGGAGTTTGACACTTTTGCAAATCAGTGGGACCCACGTGGTGAACATGTAGGTGTGAATATCAACTCTATGATCTCTGATATACTTGAGGAATGGTGGACAGATTTTTCTGTGTGGAAAGTTTATAACTGCAGTATTCAATACAATTCAACAGATAATCTTCTTAATGTTACTTTCACTGGATACAGAAATGAACTGTTAGTAACAAAATCCCTTTCATACCACATTGATTTGAGAGATTACTTACCAGATTATGTTATTGTTGGCATATCAGCTGCAACAGGTGATTCTTCTGAGGAACATACCTTGTTGTCATGGTCATTTAGTCAAAGCCTAATAATTCCAAGTAATGCAGATCATAAGAAAAGGTCAAAATTGTTGGAGGGAATTGGAATTGGTGCAGGTTTCTCTGTGAGTTTAATTGGGTTGGTCTATGCTTTTTTATGGAAGATGAATAAAAGAAAAGTAGAAGAACTTGGTCCTGAAACCACTTCTGATTTGATCATGGATGATGAGTTCCAAATGAACACACCAAAGAAGATCAGCTATAAGGAATTGGTATCTGCAACAAACAACTTTGAAGAGAGGCAGAAGCTTGGTCAAGGTGCTTTTGGTTGTGTTTATAAAGGTTATTTGGAAGACTCAAATTCATATGCTGCTATAAAGAGAATATCAGCAGATTCAACACAAGGTGTAAATGAATATGCAACAGAAGTGAAGATCATTAGCCAATTGAGGCATAAGAATTTGGTGAAACTCACTGGTTGGTGTCACAAGAAGAATGATCTTCACCTCATATATGAGTACATGTCAAATGGCAGCTTAGATTCTCTTCTTTTTAGTGGTGAAAGCATCTTGTCTTGGCAGGTGAGGTACAATATAGCTCTTGGCTTAGCATCAGCATTGCTTTATATGCAGGAAGAAGGGGAAAAATGTGTGCTTCATAGGGATATCAAATCAAGTAACATAATGTTGGATTCCAATTTCAATGCTAAGCTTGGGGATTTTGGCCTAGCTATGCTGGTGGATCATGAGAAAGGGTCACCAACCACAATTATGGCTGGCACCATTGGTCAACTAGGCCGTCAATATATGAAAACTGGCAAGGCTAGAAAGGAATCTGACATATTCTGTTTTGGGGTTGTTTTGTTGGAGATAGCCAGTGGAAGAAAAGGCATTCACAAACAAGACAAGGAGGGTGAAGTATCATTAGTTGAGTGGGTTTGGGAGCTTTATGGATTGGGAAATCTCCTTGCAGCAGCAGACACAAAGCTTTGTGGGGTATTTGATGTGCAGCAAATGGAATGCTTACTGGTTGCTGGTCTTTGGTGTGTAAATCCAGATTGCAAATCTAGACCCTCTATAAGGAAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTACCAACTCTCCCACAACAGATCCCTGTACCAGCCAATCTCCCACCAACAACAGATGAATTGTTTTTCAGTGTTTCATCTTCCTTATAG 5553 0.4003 MDQNNNYSVGRVTSYGHMHLWDMNSGKLTDFTTKFSFVIFSDENDYGDGMAFFLADPNLPLLKDIKEGGGLGLVDGSQVLKSTKHSFVAVEFDTFNNPSWDPPKQGTHVGLNFNSMRSNITKPWLTDIQEWRIYNCSIEYNSSTLNLSVSFTMYSDGKPAEEYISYKVDLRDHLPERVIFGFSAATGRLYEVHTLRSWSFSSSLLSDENINQITPIAAAPIPNPVSGKENKIGLWVGLGIGIGLAVILSGMIFTLLWKRSRGGREEFGFDLNMDVEFQKGTGPKRFSYNELVSATNKFAESEKLGQGGFGGVYKGYLKELNSNVAIKRISRESRQGIQEYATEVKVISQLRHRNLVQLIGWCHKKNDFLLIYEFMPNGSLDSHLHHGKSFLTWKVRYNIALGLASALLYLQEEWEQCVIHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTLIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIASGRKAIDQEGREGQITVVEWVWELYGLGKLLEVADPKLCGAFDEQQMERLVVVGLWCVHPDYSFRPSIRQVIHVLKFEFSLPILPQKMPVPTYLPPTIKALFSSVSSSFWTKNSDSSIRLTGNPWDPNNTGAGRVTIPKLIHLWDKTSNEVYDFTTKFSFLISSNLSLHGDGLAFFLASPSLPKANDIGGGGGLGLLPAANLVPIGYSFVAVEFDTFKNDWDPDGSHVGVDINSMSSNTYTEWSTDISERVVYNCCIEYNSRNNYLNVSFTGFTFSDGPVPQNLLYLIDLSENLPEDVIVGISAARGFYNEEHTLLSWFFSTSQPNHTLLSWSFSTSIADPKKERKNLKLLEGIGVGVGLPLSLLGLVHILLWKMNRGKEEEPNSETASELDMDDDFEMIVGPKKICYYELLTATNNFEEKQKLGQGGFGGVYKGYLTGSNSYAAIKRISANSRQGIKQYAAEVNIISQLRHRNLVKLTGWCHKKNDLLLIYEYMPNGSLDSHLFGGESILSWQVRYNIALGLTASLHYLQEEWEKCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDPDKGSQTTAVAGTMGYLAPEYMNSGKCRKESDIFSFGVVLLELASGRRVIHHQDMEGEVSLVEWVWELYGLRNLLAAADPKLCGVFDVQQMERLLVVGLWCANPDCKSRPSIKQVIKVLNFEAPLPILPQMVPVLAYFPPTTSYARRTLLFLLVFPLANTQPVSFDYPNFSKADVIKLLKLEGDASVSDSTIQLTINPEDQNSNWTGSVGRVISPKPIHLWNKSSNELKDFTTHFSFVIFSNQGPSYGDGLTFFLASPNLTNANDTTGLKAGGIGIGRVDNNQTLLQTEYQFVAVEFDTFANQWDPRGEHVGVNINSMISDILEEWWTDFSVWKVYNCSIQYNSTDNLLNVTFTGYRNELLVTKSLSYHIDLRDYLPDYVIVGISAATGDSSEEHTLLSWSFSQSLIIPSNADHKKRSKLLEGIGIGAGFSVSLIGLVYAFLWKMNKRKVEELGPETTSDLIMDDEFQMNTPKKISYKELVSATNNFEERQKLGQGAFGCVYKGYLEDSNSYAAIKRISADSTQGVNEYATEVKIISQLRHKNLVKLTGWCHKKNDLHLIYEYMSNGSLDSLLFSGESILSWQVRYNIALGLASALLYMQEEGEKCVLHRDIKSSNIMLDSNFNAKLGDFGLAMLVDHEKGSPTTIMAGTIGQLGRQYMKTGKARKESDIFCFGVVLLEIASGRKGIHKQDKEGEVSLVEWVWELYGLGNLLAAADTKLCGVFDVQQMECLLVAGLWCVNPDCKSRPSIRKVIKVLNFEAPLPTLPQQIPVPANLPPTTDELFFSVSSSL. 1851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05100 1850 Pfam Legume lectin domain 1223 1474 IPR001220 GO:0030246
Seca12g05100 1850 Pfam Legume lectin domain 4 207 IPR001220 GO:0030246
Seca12g05100 1850 Pfam Legume lectin domain 606 819 IPR001220 GO:0030246
Seca12g05100 1850 ProSitePatterns Protein kinases ATP-binding region signature. 1553 1576 IPR017441 GO:0005524
Seca12g05100 1850 FunFam Lectin-domain containing receptor kinase A4.3 987 1199 - -
Seca12g05100 1850 Gene3D - 1221 1486 - -
Seca12g05100 1850 ProSiteProfiles Protein kinase domain profile. 1547 1825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 SUPERFAMILY Protein kinase-like (PK-like) 282 591 IPR011009 -
Seca12g05100 1850 ProSiteProfiles Protein kinase domain profile. 298 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 ProSitePatterns Legume lectins beta-chain signature. 1353 1359 IPR019825 -
Seca12g05100 1850 Gene3D - 1 217 - -
Seca12g05100 1850 ProSiteProfiles Protein kinase domain profile. 910 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 Gene3D Transferase(Phosphotransferase) domain 1 375 587 - -
Seca12g05100 1850 Gene3D Transferase(Phosphotransferase) domain 1 987 1198 - -
Seca12g05100 1850 Gene3D Transferase(Phosphotransferase) domain 1 1624 1834 - -
Seca12g05100 1850 ProSitePatterns Protein kinases ATP-binding region signature. 916 939 IPR017441 GO:0005524
Seca12g05100 1850 CDD STKc_IRAK 304 568 - -
Seca12g05100 1850 FunFam L-type lectin-domain containing receptor kinase IX.1 283 374 - -
Seca12g05100 1850 FunFam Lectin-domain containing receptor kinase A4.3 375 587 - -
Seca12g05100 1850 CDD STKc_IRAK 916 1180 - -
Seca12g05100 1850 ProSitePatterns Legume lectins beta-chain signature. 702 708 IPR019825 -
Seca12g05100 1850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Seca12g05100 1850 SUPERFAMILY Concanavalin A-like lectins/glucanases 606 818 IPR013320 -
Seca12g05100 1850 FunFam Lectin-domain containing receptor kinase A4.3 1624 1836 - -
Seca12g05100 1850 Gene3D - 594 817 - -
Seca12g05100 1850 SUPERFAMILY Protein kinase-like (PK-like) 1532 1837 IPR011009 -
Seca12g05100 1850 ProSitePatterns Legume lectins alpha-chain signature. 174 183 IPR000985 -
Seca12g05100 1850 SUPERFAMILY Protein kinase-like (PK-like) 894 1198 IPR011009 -
Seca12g05100 1850 Pfam Protein kinase domain 299 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 Pfam Protein kinase domain 910 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 Pfam Protein kinase domain 1547 1813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 SUPERFAMILY Concanavalin A-like lectins/glucanases 5 207 IPR013320 -
Seca12g05100 1850 SMART serkin_6 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 SMART serkin_6 1547 1816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 SMART serkin_6 910 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05100 1850 CDD lectin_legume_LecRK_Arcelin_ConA 2 198 IPR001220 GO:0030246
Seca12g05100 1850 FunFam L-type lectin-domain containing receptor kinase IX.1 1532 1623 - -
Seca12g05100 1850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1667 1679 IPR008271 GO:0004672|GO:0006468
Seca12g05100 1850 CDD lectin_legume_LecRK_Arcelin_ConA 1223 1466 IPR001220 GO:0030246
Seca12g05100 1850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1030 1042 IPR008271 GO:0004672|GO:0006468
Seca12g05100 1850 PANTHER - 8 570 - -
Seca12g05100 1850 SUPERFAMILY Concanavalin A-like lectins/glucanases 1222 1471 IPR013320 -
Seca12g05100 1850 FunFam L-type lectin-domain containing receptor kinase IX.1 895 986 - -
Seca12g05100 1850 ProSitePatterns Legume lectins beta-chain signature. 88 94 IPR019825 -
Seca12g05100 1850 Gene3D Phosphorylase Kinase; domain 1 895 986 - -
Seca12g05100 1850 Gene3D Phosphorylase Kinase; domain 1 283 374 - -
Seca12g05100 1850 Gene3D Phosphorylase Kinase; domain 1 1532 1623 - -
Seca12g05100 1850 ProSitePatterns Protein kinases ATP-binding region signature. 304 327 IPR017441 GO:0005524
Seca12g05100 1850 CDD lectin_legume_LecRK_Arcelin_ConA 594 815 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05100 Seca-Chr12 138801950 138816253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05100 13 585 Receptor kinase-like Gene Family AT5G10530 49.228 1.67e-169 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca12g05100 Pkinase 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05100 - - gmx:100780181 951.044