Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05095 ATGGGGAGAGGAAAGATTGTGATTGAAAGGATTGAAAATTCGACTAACCGGCAAGTGACTTTTTCAAAGAGAAGAAAAGGTTTACTGAAGAAAGCAAGAGAACTATCCATTCTCTGTGATGCAGAAGTTGGATTGATTGTCTTCTCTTGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTCATTGAGCGTTATAACAAGCTAAAAGAGAACCATGATCAGCTAATGAGTCCTGCTTCAGAAGTCAAGGTAACACAGTCCACTTGTACCACTCCATTTATGTTGTATTTTCCCTGTATAAAGTTATATATATCCCTATAG 333 0.3844 MGRGKIVIERIENSTNRQVTFSKRRKGLLKKARELSILCDAEVGLIVFSCTGKLYDYASTSMKSVIERYNKLKENHDQLMSPASEVKVTQSTCTTPFMLYFPCIKLYISL. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05095 110 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca12g05095 110 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca12g05095 110 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Seca12g05095 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca12g05095 110 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g05095 110 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Seca12g05095 110 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Seca12g05095 110 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Seca12g05095 110 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g05095 110 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g05095 110 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g05095 110 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05095 Seca-Chr12 138743893 138747341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05095 1 94 MADS-box Gene Family AT4G37940 73.404 2.60e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05095 SRF-TF 7.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05095 K09264 - gmx:100779647 153.68