Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05093 ATGGGAAGAGGGAAAATTGTGATCAAAAGGATTGACAACACCACAAACAGGCAAGTGACTTTTTCAAAAAGAAGAAGTGGGCTGCTCAAAAAGGCAAGGGAGTTGTCTATCCTTTGTGATGCTGAAATCGGAGTTATTATCTTCTCCAGTACTGGCAGGCTCTATGATTTTGCAAGCTCAAGCAGCATTAATTCCATCATTGAACGCTATAATAGACAAAAGGAAGAACGGAATCGGCTGATGGATCATGCATCACAAGTCAAGTTTTGGCAGAATGAGGCAGCAAGGTTAAGGCAACAATTGCAGCATGTGCAAAACTATAATAGGCAATTGATGGGCCATGAGTTATCTAGTTTGAGCATCAAAGATCTGCGGAACATGGAAAACCAGTTGGAAATGAGTTTAAGGAGTATCCGTGTGAAAAAGGACCAACTTCTCATCGGTGAAATAGAAAAATTAACCCAGAAGGTTAGAGCAAGTGATGCACATAAAGCAAATAGTGGCTCTCCTTTTCCAAGCGCCTCGGTGGACAATGAACATGGCCGAAACGTACCTCTCCATCTCCATACAATTGAGCCTCAGCTTCAAAACAATGTAATACCAGCAAAACCAGTGAAACTGGGGTATTTTCTATAA 636 0.4151 MGRGKIVIKRIDNTTNRQVTFSKRRSGLLKKARELSILCDAEIGVIIFSSTGRLYDFASSSSINSIIERYNRQKEERNRLMDHASQVKFWQNEAARLRQQLQHVQNYNRQLMGHELSSLSIKDLRNMENQLEMSLRSIRVKKDQLLIGEIEKLTQKVRASDAHKANSGSPFPSASVDNEHGRNVPLHLHTIEPQLQNNVIPAKPVKLGYFL. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05093 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 Coils Coil 80 107 - -
Seca12g05093 211 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Seca12g05093 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Seca12g05093 211 ProSiteProfiles K-box domain profile. 87 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g05093 211 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca12g05093 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 Pfam K-box region 83 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g05093 211 MobiDBLite consensus disorder prediction 160 176 - -
Seca12g05093 211 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Seca12g05093 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g05093 211 MobiDBLite consensus disorder prediction 158 181 - -
Seca12g05093 211 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05093 Seca-Chr12 138650655 138657697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05093 1 156 MADS-box Gene Family AT2G14210 66.667 1.23e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca12g05093 K-box 3.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05093 K09264 - rcu:8279200 236.113