Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05076 ATGCGCATAACCAGTGCGATAGCAAATAGCAACAAACCTCTTTTCCATAATTCTCCCTTACCTCAATTGCTATGTGCGCGATCTCATTCATCCACCAATTTGTTCGTCACAGTTGACCTCCGCACTGCAATTTTTGGTTTTGTTTTGGAAAAAAAAGGGCTTTCCTACGATACGAATGAAACTGTACTAAGAGACGCCTTTGGGCAACATGGGGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGGAAATCAAAAGGTTATGGATTCGTGCGGTTCACTTCTGAAACTACAGCTACCACAGCTTGCAAAGAAATGCACCGCCAGATTCTGGATGGCAGACGCATTCGAGTGAGTTTTGCACACAAAGGGTAG 381 0.4278 MRITSAIANSNKPLFHNSPLPQLLCARSHSSTNLFVTVDLRTAIFGFVLEKKGLSYDTNETVLRDAFGQHGEIIEVKVICDHVTGKSKGYGFVRFTSETTATTACKEMHRQILDGRRIRVSFAHKG. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05076 126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Seca12g05076 126 SUPERFAMILY RNA-binding domain, RBD 52 125 IPR035979 GO:0003676
Seca12g05076 126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Seca12g05076 126 SMART rrm1_1 52 121 IPR000504 GO:0003723
Seca12g05076 126 Gene3D - 17 126 IPR012677 -
Seca12g05076 126 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 52 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05076 Seca-Chr12 137917028 137918126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05076 54 125 Eukaryotic Initiation Factors Gene Family AT4G34110 40.278 4.17e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05076 K13195 - gmx:100306540 160.229