Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05065 ATGGAGATTTCATCCATCAGAGGTTTACCTGATCAGGAAATGATGGAGGATCCTACCTTTCTCCATCAGTGGCACTTGAGTTCTATTAATGATCCTAGCTTACTACCAATAGCTGCTGCTTTTGGAGAGACTTTACAACAACATTCATTCACTTATCCAAACTTCAACCCCAGAACTTCCATGGAAACTGCACTTGCTGATATTGAAAGACCCACAAAACATCTCAAAATAAATACTGCTCAGACACCAGAGACACAATTTGTTACTTGCCCTGATCTTCTTTCATTTGTGGATTCCAATTACTTAAATCAGTTGGGATTAGTACTTAAGCATAAAGATGAAATGGTTTGTCCTAAAATCAATTGCACAACCCCTCCAGACATGATCTCTCAAGAAACTTTGGAGAATCAAAACTATGTCTTCAGGACTTGCCATGAGGCCAAAAAGATAGGGACACGTTCTAGGCTTTCTCAACCTCAAGACCACATAATGGCTGAAAGAAAAAGGAGAGAGAAGCTCAGCCAGAGGTTCATTGCTTTATCTGCCCTTGTTCCTGGACTACAAAAGACAGATAAAGCTTCTGTTCTTGGAGATGCAATCAAGTACTTGAAGCAGTTGCAGGAGAAAGTGAGGGCTCTTGAGGAGGAACAGAACATGAAGAAAAATGTGGAATCTGTGGTGGTTGTGAAGAAATCTCAACTATCCAATGATGTTGAAAACTCTTCTTCAGAAACTGGTGGTCCCTTTGATGAGGAACTTCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGAGCAAAGGAGTTGTAGAAAATACAATCCATGAAATTGAGAAATTCCATCTTAAAGTCATCAATAGCAGTGCCATGACATTTGGGAGCTGTGCCCTTGATATAACAATTATTGCTCAGGTAAATTTTGTACCTAAGTATTAA 960 0.3937 MEISSIRGLPDQEMMEDPTFLHQWHLSSINDPSLLPIAAAFGETLQQHSFTYPNFNPRTSMETALADIERPTKHLKINTAQTPETQFVTCPDLLSFVDSNYLNQLGLVLKHKDEMVCPKINCTTPPDMISQETLENQNYVFRTCHEAKKIGTRSRLSQPQDHIMAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVRALEEEQNMKKNVESVVVVKKSQLSNDVENSSSETGGPFDEELPEIEARFCERNVLIRVHCEKSKGVVENTIHEIEKFHLKVINSSAMTFGSCALDITIIAQVNFVPKY. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05065 319 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Seca12g05065 319 Gene3D - 155 231 IPR036638 GO:0046983
Seca12g05065 319 Coils Coil 196 226 - -
Seca12g05065 319 PANTHER BHLH TRANSCRIPTION FACTOR 41 314 - -
Seca12g05065 319 SMART finulus 163 212 IPR011598 GO:0046983
Seca12g05065 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 221 IPR036638 GO:0046983
Seca12g05065 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05065 Seca-Chr12 137796101 137798731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05065 1 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.412 3.23e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g05065 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05065 - - vun:114179595 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05065 12 137796101 137798731 Seca12g05065 12 137796101 137798731 ECH
Seca12g05065 12 137796101 137798731 Seca6g05050 6 117750460 117753764 PCT