Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05044 ATGCTTATTCATTTAGTGTTTTTTTGTGTCATGATTAATAATCGATTGAGGCATATCCATGATGAACAGAAACGAAAGAAAATCAGACAGATAGACAAACTTGTTCCCATGGAGGTTCTAGAGGAAAGAATACAGCAGGTCAACAAAGTTGGACGGTTGACTTGTAGAATGAGCTTCACAGAATTCTGTAATGCAACGGAGTACTTCAGTGAGGACTATGCTATTGGGGTGGGAGTGACTGGGATAATGTACAAGGCAACTCTTCCCATTCCCAATGGTAGGTTCTTGGCAGTTAAGAGAATGTATGATTCTCAGTTTTTTATGAGAAGGTTCGAGTTAGAAATAATGATTCTAGGGAGATACAATCACAGCAACATAGTTCCCCTGCTTGGTTTCTGCATAGAAGAAGAAAGAAATGAAAGGATTTTGGTGTATCAATACATGTCAAATGGAAGGCTTTCTGATTGGTTGAATGATACAACAACCACATTAGGATGGCCTGTAGTTATTAGGATTGCACTTGGTGTAGCAAGAGGTTTATCTTGCCTCCATCATTGCTTGCATATGGCACATCTCAGTATCAGTTCTGAGTGTATCTTGCTAGGAGACAATTTTGAGCCAAAAATATCCAATTTTGGAGAGGCCAAGTTTATGAACCATCATGATCTGAGAAAAAACATGGGATTTGAGAAAGAGGATGTCTATGACTTTGGAAGTTTGCTTTTTGAGCTTATTAGGGGGAAGAAATTTGGTCAAACATATGTGAGTAAAGGTCCTTTTGCCACTTACACATATCCTAATCCTATTAATATGTTGGAGGACCCTTCTGGCTTCTATGATGCCATGGATGAATGTCTAAACAAGATTGAATTTGAAGATGAGGTATCTGCTCTTCTCAGAGTTGCATGTGACTGTGTTCATCCTTCTCATGAGCAGAGGCCGACTATGCTTGACGTATACAGCAAGATGAGCAACATATGGGAGAGAGATGGAATTTGTGAAGATTCTGTGACCTCTTATCAATCTGATTATGTTTCTGCTCCCATAGGAGAAGAATATGTCTAG 1065 0.3915 MLIHLVFFCVMINNRLRHIHDEQKRKKIRQIDKLVPMEVLEERIQQVNKVGRLTCRMSFTEFCNATEYFSEDYAIGVGVTGIMYKATLPIPNGRFLAVKRMYDSQFFMRRFELEIMILGRYNHSNIVPLLGFCIEEERNERILVYQYMSNGRLSDWLNDTTTTLGWPVVIRIALGVARGLSCLHHCLHMAHLSISSECILLGDNFEPKISNFGEAKFMNHHDLRKNMGFEKEDVYDFGSLLFELIRGKKFGQTYVSKGPFATYTYPNPINMLEDPSGFYDAMDECLNKIEFEDEVSALLRVACDCVHPSHEQRPTMLDVYSKMSNIWERDGICEDSVTSYQSDYVSAPIGEEYV. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05044 354 Gene3D Transferase(Phosphotransferase) domain 1 148 343 - -
Seca12g05044 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 42 342 - -
Seca12g05044 354 Pfam Protein kinase domain 71 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05044 354 ProSiteProfiles Protein kinase domain profile. 69 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05044 354 Gene3D Phosphorylase Kinase; domain 1 30 147 - -
Seca12g05044 354 SUPERFAMILY Protein kinase-like (PK-like) 54 321 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05044 Seca-Chr12 137031769 137033067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05044 43 334 Receptor kinase-like Gene Family AT1G27190 30.149 9.91e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g05044 Pkinase 1.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05044 - - gmx:102663800 427.172