Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05043 ATGGGTGATGATAGTGTTGATTTAACTACACCAACAAAAGGCTTAAATGATCCTGTTGATACGTCTAAGGAATGGGTTCCTGAGTGTAATGAAGAAATCAAACCTGTAGTTGGCAGAGTCTTTGATACTTTAGAACAAGGAGGGGATTTTTATCAAAGGTATGCACATATTGTTGGTTTTAGTGCACGTAAAGCAACTGAAACGAAAGATAAAAATGGAGAAATAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAGAAAAATGAGTCTCCAGATGAATTTGAATTGACATGGAAAACTATCATTATTGATTTTAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGCATGACATGCGAAGTATGTGGATACCAGCTTATTTCAAAAATATTTTTCTAGCTGGAATTTTGAGAACAACCTCAAGTTCCGAGAGTGAAAATTCCTTCTTTGGTAATTACATGAATAAGAACCTTAGTTTGGTGGAATTTTGGATGAGATTTGATTCTGCACTAGAAGCACATAGGCATAATGAATTACTTGCAGATAATAATACACTTCATACTATACCCGAATTGAAGCTGCATAAGGATATAGATAAGCATGGCAGAGAAGTTTACACTCATAAAAACTTTTACATATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGTTTGAAGAAACAAAAGAGGATAATGGGCATTTATTAATTGTTATACTTGACAAAGTGAGCAAACATCGGAAAGTTGTTTATAATCCTTCTAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTATTATTAAAGGGTAAAGTCTTGAATGAAATTCCAAGTTATTACATTATTAATAGATGGACCAAATTAGCAACTAGTGCTCCAATTTTTTATTATGATGGCAATGTATTGGAGGCATGCTTCAAATTGGAAAGTGAGAGCAAGTTAATTTCTGATGCATGGGCACAATTGTTTAAATGCATGCATTTGGCTGATACATGTAAAGATAAACTACTCCTTGTCATAAATGAAGCTTCTAGTATTGAAATGAAATTGATTAAGATGAAAGGTGATGTTGGACCAAGCAAGTTGAATGAATTAGAGTCATTTGTTGGCTCCACCGTACCAGAGAAGGTTGACATTCTTCCTCCTCAACCTTCAAATACCAAAGGATGTGGAAAACAGATTAAAGGAGGAAAGGAGAAGGCAATGGAGCAACAACAAAAAGAAAACAAGACTTTGTAA 1290 0.3419 MGDDSVDLTTPTKGLNDPVDTSKEWVPECNEEIKPVVGRVFDTLEQGGDFYQRYAHIVGFSARKATETKDKNGEIKWKYFLCSKEGFKLEKNESPDEFELTWKTIIIDFKLEENGWLSQMHDMRSMWIPAYFKNIFLAGILRTTSSSESENSFFGNYMNKNLSLVEFWMRFDSALEAHRHNELLADNNTLHTIPELKLHKDIDKHGREVYTHKNFYIFQGELWSACVDCGFEETKEDNGHLLIVILDKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILLLLKGKVLNEIPSYYIINRWTKLATSAPIFYYDGNVLEACFKLESESKLISDAWAQLFKCMHLADTCKDKLLLVINEASSIEMKLIKMKGDVGPSKLNELESFVGSTVPEKVDILPPQPSNTKGCGKQIKGGKEKAMEQQQKENKTL. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05043 429 Coils Coil 412 429 - -
Seca12g05043 429 SMART 26again6 264 291 IPR006564 GO:0008270
Seca12g05043 429 Pfam FAR1 DNA-binding domain 49 94 IPR004330 -
Seca12g05043 429 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g05043 429 MobiDBLite consensus disorder prediction 398 429 - -
Seca12g05043 429 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 92 IPR031052 GO:0006355
Seca12g05043 429 MobiDBLite consensus disorder prediction 410 429 - -
Seca12g05043 429 ProSiteProfiles Zinc finger SWIM-type profile. 253 289 IPR007527 GO:0008270
Seca12g05043 429 Pfam SWIM zinc finger 264 285 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05043 Seca-Chr12 137028158 137030309 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05043 FAR1 2.3e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05043 - - mtr:120577464 472.241