Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05042 ATGGCTTTCCAGATAAAAAGGGATAGTCTGTTCCAGACCTTATTGTGTTCCTTGTTCAGTATCTTAATGACAAGCCAGGGTACTGAGAGTGATATCTTCTGTTTAAAATCCCTTAAGAATTCCTTGGAAGACCAGTTTAATTTCTTAGCAAGCTGGAACTTCAACAACAATACCGAAGGTTTCATGTGTAGATTTGTTGGTGTTGAATGCTGGCATCCTGATGAGAACAGAGTACTTAATCTCCAACTTTCTAACATGGGCCTCAAAGGCCAGTTTCCACGAGGCATTCGGAATTGCTCGTCATTAACAGGCTTAGACCTTTCATTCAACACTTTCACAGGACCCATCCCATCTGATATTTCAACATTAATCCCATATGTTTCCCACATTGATCTCTCTAATAACAATTTCACTGGTGAAATCCCCATAGCTTTAGCAAACATTACTTACCTAAATACTCTTAAACTTGATAACAACATTTTAAGCGGTCAAATACCACCAGATTTTGGGCAGCTAAGCAGGCTTAAATCAATTTCTTTTGCTAACAATAATTTGTCAGGGCCAGTTCCTGAGTTCTCCCAAGAAGTAATTACTGTTTATGCTAATAATAGTGGACTATGTGGAGGGCCTTTGGAACCATGCTCCGTTGACAGGTCCAATGAATTTCATCAATCATTCAAGACTGGCCTTATTGTTGGTTATGCCTTTTCAGTCACTTCTGCTATTGTTGTTTTTATGTCCTACTCCAACTCTGCACCTTCCAAGCACAGGAAAAACAACCACCTAAACAAAGCTAAACAACTTGGCAAATATATTTCTTCCATCAAAAGGAGGAAGACGCAAAGTATAGCTAATCAGATGCACGGGTTGCTACCTCAGCAGCTGGTAGAGAAACGAAGCAAAGAGATCTCTGCACTATTGGAAAGATTGACTTCCACTATGAGATTTGAAGAACTCCATGATGCAACAGACTGTTTTGCTGTGGACAATGCTATTGGTGTGGGGAAGATGGGAATGATGTACCAAGGAAGGTTAACTAATGAATTTGAAAGTGAAGTATGTACTCTCATCAAAATTGCTTGTGAGTGTGTTCAGACTTTACCAGATCAAAGACCAACAATGCTTGAAGTTTACAACAATATGAGGAATATAAGGAAGGGACAGGATGGATTCATTGATGATTCTGACATGCCCGGGGCATCAGAAGTTGCTTCTGTTTTTAGTATAGAGTCTATAGAAATGGCTTTCCAAATAAAAAGGGATATTCTGTTCCAGACCTTCTTGTGTTCATTGTTCAGTATCTTAATGACATGTCATGGAACTTACACTGATATCTTCTGTTTGAAATCCCTTAAGGATTCCTTAGAAGACCCGTTTAATTACCTATCCTCATCCTGGAACTTCAACAACTATACCGAAGGTTTCATATGTAGATTTAATGGTGTTGAATGCTGGCATCCTGGTGAGAACAGAGGTCAGTTTCCACAGGGCCTTCAGAATTGCTCTTCATTAGTGGGCTTAGACCTTTCAATCAATGAGCTCACAGGACCCATCCCATCTGATATACATAAATTAATCCCATATGTTACCAGCATTGATCTCTCCAATAACAATTTCATTGGTGAAATTCCCACATCTTTAGCAAACTGCAATTACCTGAATAGTCTTAAACTTGATAACAACATGTTAAGTGGTCAAATCCCTCAAGAACTTGGGCTACTTCCCAGGATTAAAATAATTTCCTTTGCTAACAATCATTTGTCAGGGCCAGTTCCTGTGTTCAGAGAAGGGGTAGTAGTTTCTGTTGATAATTATGCTAATAATAATGGACTTTGTGGAGGGCCTTTGGAACCTTGTTCTGTCAATGAATTCCACCAATCATTCAAGAGTGGCCTTATTGATAAAAATAACTACCTAAACAAAATTAAAGAACTTGGCAAATATATTTGTTCAATCACAAGGATGAAGACAGAAAGGTTAGCTGATCAGATGCATGAATTGGTTCCTCTGCTGCAGGTAGAGAAAGGAAGCAAAGAGGAACTCCGTGATGCAACAAACTGTTTTTCTATAGACAATGCAATTGGGGTGGGGAAGATGGGAATGATGTATCAGGGAAGGCTACCTAATGGTCAATTCCTAGCTGTTAAGAGACTATCTGACCCTCAGCAGTTTAAGAAGCAGTTCCTTTCAGAAATAATGATTCTGGGTAAGTATAGACATAGAAATATAGTTCCCTTGCTTGGCTTCTGCAATGAAAGAAAAGAAAAGATTTTGGCATACTCATACATGTCAAATGGAAGACTTTCCAAATGGTTGCATCCTTTAGAATGTGAAGTTATGAGATTGAAATGGCCTGAGAGGGTCAACATTGCACTTGGGATAGCAAGAGGGTTATCATGGCTACATCATAATTGCAATTTGCATATAGTTCATCTTAATATATGTTCACAATGTGTTTTGCTAGATGAGAATTTTGAACCCAAAATATCTAATTTTGGAGAGGCTAAATTTATGATTCCAAACATTGAGGAAGATTTAGGCATCATATTTGAAGCAAATGATGGGAAGAAGGATGTTTATGACTTCGGTAGTGTGCTTTTTGAACTGATTACAGGGGAAACATATGACGAACTGTGTCGTTCATCAAACACTACTAAACTCTATAGCAACCCTTCAAATTTTTATAATGCAATTGATAAATCTCTAATTGGGGAAGGATTTGAAAATGAAATATATACACTCATCAAAATTGCTTGTGAGTGTGCTCAGCCTTTACCAGATCAAAGGCCAACAATGCTTGAAGTTTACAACATAATTAACAACATAAGGAAGGGACGACAAAGATTTAATGATGATTCTGATGCACTCAGGGGATCCGAAATTGCTTCTGTTACTTGTATAGATGAAATTGTGGAGTTATAA 2922 0.3806 MAFQIKRDSLFQTLLCSLFSILMTSQGTESDIFCLKSLKNSLEDQFNFLASWNFNNNTEGFMCRFVGVECWHPDENRVLNLQLSNMGLKGQFPRGIRNCSSLTGLDLSFNTFTGPIPSDISTLIPYVSHIDLSNNNFTGEIPIALANITYLNTLKLDNNILSGQIPPDFGQLSRLKSISFANNNLSGPVPEFSQEVITVYANNSGLCGGPLEPCSVDRSNEFHQSFKTGLIVGYAFSVTSAIVVFMSYSNSAPSKHRKNNHLNKAKQLGKYISSIKRRKTQSIANQMHGLLPQQLVEKRSKEISALLERLTSTMRFEELHDATDCFAVDNAIGVGKMGMMYQGRLTNEFESEVCTLIKIACECVQTLPDQRPTMLEVYNNMRNIRKGQDGFIDDSDMPGASEVASVFSIESIEMAFQIKRDILFQTFLCSLFSILMTCHGTYTDIFCLKSLKDSLEDPFNYLSSSWNFNNYTEGFICRFNGVECWHPGENRGQFPQGLQNCSSLVGLDLSINELTGPIPSDIHKLIPYVTSIDLSNNNFIGEIPTSLANCNYLNSLKLDNNMLSGQIPQELGLLPRIKIISFANNHLSGPVPVFREGVVVSVDNYANNNGLCGGPLEPCSVNEFHQSFKSGLIDKNNYLNKIKELGKYICSITRMKTERLADQMHELVPLLQVEKGSKEELRDATNCFSIDNAIGVGKMGMMYQGRLPNGQFLAVKRLSDPQQFKKQFLSEIMILGKYRHRNIVPLLGFCNERKEKILAYSYMSNGRLSKWLHPLECEVMRLKWPERVNIALGIARGLSWLHHNCNLHIVHLNICSQCVLLDENFEPKISNFGEAKFMIPNIEEDLGIIFEANDGKKDVYDFGSVLFELITGETYDELCRSSNTTKLYSNPSNFYNAIDKSLIGEGFENEIYTLIKIACECAQPLPDQRPTMLEVYNIINNIRKGRQRFNDDSDALRGSEIASVTCIDEIVEL. 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05042 973 SUPERFAMILY Protein kinase-like (PK-like) 670 938 IPR011009 -
Seca12g05042 973 Gene3D Transferase(Phosphotransferase) domain 1 763 962 - -
Seca12g05042 973 FunFam Leucine-rich repeat receptor-like protein kinase 28 191 - -
Seca12g05042 973 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Seca12g05042 973 Pfam Leucine rich repeat N-terminal domain 444 485 IPR013210 -
Seca12g05042 973 Pfam Protein tyrosine and serine/threonine kinase 690 937 IPR001245 GO:0004672|GO:0006468
Seca12g05042 973 Gene3D Phosphorylase Kinase; domain 1 650 762 - -
Seca12g05042 973 SUPERFAMILY L domain-like 62 624 - -
Seca12g05042 973 ProSiteProfiles Protein kinase domain profile. 688 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05042 973 Gene3D Ribonuclease Inhibitor 29 215 IPR032675 -
Seca12g05042 973 Gene3D Ribonuclease Inhibitor 443 620 IPR032675 -
Seca12g05042 973 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 70 193 - -
Seca12g05042 973 FunFam Leucine-rich repeat receptor protein kinase EMS1 494 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05042 Seca-Chr12 137006825 137016902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05042 422 942 Receptor kinase-like Gene Family AT3G28450 36.696 3.52e-98 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Seca12g05042 PK_Tyr_Ser-Thr 1.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05042 - - gmx:100819209 723.776