Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05041 ATGGCTTTTAAAACAACCGAAATCCATCAATCATTCATAGATGGCCTTATTGCTGGTTATACTTTTTCAGTAACTGTTATTGTTGCTTATATCTTGTACTACTTCGCACCTTACACACAATGGAAGCAGAAGAAAAAGATCCACTACAGAAACAAAGCTAAAGAATTGGGCAAATATATTTGTTCAATCATAAGTTGGAAGACACGAATAGTAGCTTATCAGATACACGAAATACTATCACTGCAATTGCGAAAGGAAAGAAAACAGATCTCTGCACTATTGGAAAGATTGACTTCCACAATGACGTTTGAAGAACTTGGCATTGCAACTGACTCCTTTACTATTGACAATGCCATTGGGATAGGGAAGATGGGAACAATGTACGAGGGTAGACTACCTAACAATTGCTGCCTAGCTGTTAAGAGACTAAATGATTTTCAACTGTTTAAGAGGCGGTTCCTTTTAGAAACATTTATTCTGTGTAAGTTCACACACAGAAATATAGTTCCCCTGCTTGGCTTCTGCAATGAAATAAATGAAAGGATTTTGGCATACCCATACATGTCAAATGGAAGACTTTCCAAATGGTTGCATCCTTTAGAATTTGAAGTTATGAGATTGAAATGGCCTCAGAGGCTTAATATAGCACTTGGGGTAGCAAGAGGCTTATCCTGGCTCCATCATAGCTGCAGTTTACATATAGTGCATTTCAATATATGTTCACAATGTATATTGCTAGATGAGAATTTTGAACCCAAAATATCCAATTTTGGAGAGGCCAAATTTATGAATCCCAATAATGAGGATGATCTTGCCATGACATTTAAAGTAAATAATGGGAAGAAGGATGTGTATGACTTTGGAAGTGTACTTTTTGAACTGATTACAGGGGAAACATATGATGAACTTTCCCGTTCATCAAACACTACTACTAATCTCTGTGGTAACCCATCAAAGTTTTTTAATGCAATTGATAAATCTCTGATTGGAGAAGGATTTGAAAATGAAATGTGTAATCTCCTCAAAATTGCTTCTGAGTGTGTTCAGCCCTTACCAGATCAAAGGCCAACAATGCTTGAAGTACACAACAATATAAGCAATATATGGAAGGGACGACCAAGATTCAGGGATGATTCTGATGCACCCAGGGGATCAGAAATTGCTTCTGTTACTTGTACAGATGAAATTGTCGAGTTATAA 1200 0.3675 MAFKTTEIHQSFIDGLIAGYTFSVTVIVAYILYYFAPYTQWKQKKKIHYRNKAKELGKYICSIISWKTRIVAYQIHEILSLQLRKERKQISALLERLTSTMTFEELGIATDSFTIDNAIGIGKMGTMYEGRLPNNCCLAVKRLNDFQLFKRRFLLETFILCKFTHRNIVPLLGFCNEINERILAYPYMSNGRLSKWLHPLEFEVMRLKWPQRLNIALGVARGLSWLHHSCSLHIVHFNICSQCILLDENFEPKISNFGEAKFMNPNNEDDLAMTFKVNNGKKDVYDFGSVLFELITGETYDELSRSSNTTTNLCGNPSKFFNAIDKSLIGEGFENEMCNLLKIASECVQPLPDQRPTMLEVHNNISNIWKGRPRFRDDSDAPRGSEIASVTCTDEIVEL. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05041 399 ProSiteProfiles Protein kinase domain profile. 113 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05041 399 Gene3D Phosphorylase Kinase; domain 1 73 187 - -
Seca12g05041 399 Pfam Protein tyrosine and serine/threonine kinase 114 364 IPR001245 GO:0004672|GO:0006468
Seca12g05041 399 SUPERFAMILY Protein kinase-like (PK-like) 93 363 IPR011009 -
Seca12g05041 399 Gene3D Transferase(Phosphotransferase) domain 1 188 381 - -
Seca12g05041 399 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 47 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05041 Seca-Chr12 137000663 137005602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05041 17 361 Receptor kinase-like Gene Family AT5G07280 31.793 5.39e-48 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca12g05041 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05041 - - tpra:123918107 522.702