Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05030 ATGCTCAGTTTGGATGAGATGAGCAGGACTCACTTGATTTTGATTATAGGAATATGCATAGGCTTTGTTGTTGGAGTGGGTTTGGTATTTTCAATTTTATTCTGCTTCAGATGTGGAAGGAAGCGTACAAGGGTGGAGAAGAGCAGTTCTCAGGGAGTAGTGGCCATTCCTGTTCAAGTCAAAGGGGTTGATTCCAGCACAACATTATCAGACTCCAATGTGGCTCTGGAGTCACCCAGAACATCTGAGTGGAGTAACATGCCTTTATGGTTGGAAGGACTTAGGAGGAAGAATGTAGTTTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCCATGGAGCGTTTGGTCCTGTTTACAAAGCACAGATGTCTGCAGATGAGACTTTTGCAGTTAAAGTTCTTGGTACTAATTCAAGACAAGGAGAACAGGAATTTTTAACTGAGCAGGTCCTATTACTTGGAAGATTACATCACAGAAACCTTGTGGGTTTGGTGGGATATGCTGCAGAAAGAGGACAGCATATGCTCCTTTACATTTACATGAGCAACGGCAGTCTTGCTTCTCATTTGTATGATCTAGGCAAAAGTCATGAGCCATTGAGCTGGGATTTGAGACTTAGCATAGCCCTAGATGTTGCAAGGGGACTGGAATATCTACATTATGGGGCTGCTCCCCCTGTTGTGCACCGTGACATCAAATCTTCCAACATATTGTTGGACCAGTATATGAGAGCTAAGATCACTGACTTAGGGCTTTCCAGACCAGAGATGATCACACCTCATACATCAAATGTCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATCTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGTTTTGGTGTGCTACTGTTTGAGCTTATTACTGGCAGGAATCCACAGCAGGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAAGTGAGGGCAAGGTTGGATGGGAAGAAATTGTGGATTCGCAACTGAATCGAAAATATGATGTTCATAAGCTTAATGACATGGCTTCACTTGCACTCAAATGTGTTAATGGCGTCTCCAAAATCCGACCTTCAATGAGGGATATTGTTCAAGCATTATCTCAGCTTTGTAAGAAGCATAGTAGAAAAGATAGCCGAGCATCTCCTGCTGCATTAAAGGAAGTGTCCATTGAAGTGGGCCAGCTAGAATCTCATGATTTTTCATCAATTGACGAGTGTTCAAAGGTGCTACGAAGATTGCATAGCCGATAA 1305 0.4199 MLSLDEMSRTHLILIIGICIGFVVGVGLVFSILFCFRCGRKRTRVEKSSSQGVVAIPVQVKGVDSSTTLSDSNVALESPRTSEWSNMPLWLEGLRRKNVVSACGIPKYSYKDIQKATSNFTTIIGHGAFGPVYKAQMSADETFAVKVLGTNSRQGEQEFLTEQVLLLGRLHHRNLVGLVGYAAERGQHMLLYIYMSNGSLASHLYDLGKSHEPLSWDLRLSIALDVARGLEYLHYGAAPPVVHRDIKSSNILLDQYMRAKITDLGLSRPEMITPHTSNVRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEGKVGWEEIVDSQLNRKYDVHKLNDMASLALKCVNGVSKIRPSMRDIVQALSQLCKKHSRKDSRASPAALKEVSIEVGQLESHDFSSIDECSKVLRRLHSR. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05030 434 CDD STKc_IRAK 124 387 - -
Seca12g05030 434 Gene3D Transferase(Phosphotransferase) domain 1 195 409 - -
Seca12g05030 434 Gene3D Phosphorylase Kinase; domain 1 82 194 - -
Seca12g05030 434 SMART serkin_6 118 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05030 434 FunFam calcium/calmodulin-regulated receptor-like kinase 1 195 404 - -
Seca12g05030 434 Pfam Protein tyrosine and serine/threonine kinase 120 384 IPR001245 GO:0004672|GO:0006468
Seca12g05030 434 SUPERFAMILY Protein kinase-like (PK-like) 99 384 IPR011009 -
Seca12g05030 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Seca12g05030 434 ProSiteProfiles Protein kinase domain profile. 118 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05030 434 PANTHER OS01G0750732 PROTEIN 15 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05030 Seca-Chr12 136679854 136684998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05030 104 388 Receptor kinase-like Gene Family AT3G19300 42.414 1.77e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca12g05030 PK_Tyr_Ser-Thr 9.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05030 - - gmx:100816549 629.787