Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05026 ATGAACACGACAACTATAATGTGGAATCCTGACATTCCCGAGGCCATTGAGTTTAAAAGAAGCTTGGCAGAACATGGATTTGAAACTGAGGCTGCGGTTGGGGCGATTGGAGAAGGACACAATGACCTCAGTATGAAGGATGATTTCCTTGGTTTTTATCCCGGGAAAACGATTAATGAGCTGCACATGACAGAGGAGGAGGGAAATTTTATAGTCATTGCAACGGTGGCTGCCATACTTGGGGATGATGCATGGTGGTATTCGGCGTGCTCTTGCATGAAAGCTGTGAATGAGGAGGATGGGGTTTTCTTCTGCCCAGTGTGCAAAGCTAATGTTAAGGAATTTACACCAAGGTTCAAGCTGAAGATTGAGGTCTTTGACGGTGATGACACAACTGCTTTCATTCTCTTTGACCAAGATGCCCAGTTTCTGCTCGGGAAGACATGTGCTGAATTTGTCGCAGAGGCAAAGGACCCTGAATTGGTGAAATTCCTGATGAGTTTCAAGTCTTGGATGGGAAGGAAATGCTTTTCAAGGTTGACAAGGGTCCTGAGTATGCCTTTAGGTTTGATGATACTTTTAGGGTGA 588 0.4507 MNTTTIMWNPDIPEAIEFKRSLAEHGFETEAAVGAIGEGHNDLSMKDDFLGFYPGKTINELHMTEEEGNFIVIATVAAILGDDAWWYSACSCMKAVNEEDGVFFCPVCKANVKEFTPRFKLKIEVFDGDDTTAFILFDQDAQFLLGKTCAEFVAEAKDPELVKFLMSFKSWMGRKCFSRLTRVLSMPLGLMILLG. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05026 195 SUPERFAMILY Nucleic acid-binding proteins 53 179 IPR012340 -
Seca12g05026 195 Pfam Replication factor-A C terminal domain 70 178 IPR013955 -
Seca12g05026 195 CDD RPA1_DBD_C 56 172 IPR047192 -
Seca12g05026 195 PANTHER OS03G0429900 PROTEIN 56 157 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca12g05026 195 Gene3D - 52 182 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05026 Seca-Chr12 136640099 136642057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05026 1 148 Core DNA Replication Machinery Family AT5G08020 28.205 7.22e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05026 - - lja:Lj3g3v3527180.1 162.54