Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05007 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAATTGGTGGAGTATTGATTCAACAAGAAGTGTATTTCCTCTGATCTCATCCTCATCATCACCCTGTTCCGTGGATGCAGGAAACTACAGGCAAATTGATATCATGGATTTGAAGGAAACCAATAAGTCTTGTGCTGAAGAGACTAATAATACTAACAATAATTTGGTTTCTGATAGTTACCTGGGTTTCTTTGATGCACAGAAGCCACACAAGAGTGAATCATCATCATCAGCCAGTGGAAGTGGTAGCATATTAATTGATTCAACTTTACAGATGATGGGTTTTGGCCTCAATTCTTCAACTTCACTTAGTTGGAATCAGCCTCTATTGCCAGAGAGAAATTTTCATTCCATGCTTCAAGAAGAAACGGTTATAGATTCTTCTAATTCACAAATTCAAAGGGATTGGAATAGTCCAAAGAGCTTCTCATCTGATGGTAGATCAATAAACCAAGTTTCCACTTTCAAGCCAACAATGAACCAAGAATTTTCCTTAGATCAACAACAGAGTCTGAGTTCTGTAACCAGCACTTTGTTATCATCATCTTCAAATCGTGGTAATTTCCCAATTGGATCAGCCTCATATGGTTGCCCTTCAATGTTGATGCAAAGGTTATATGAAGACCCTGATGAAGATAATCTTCAACCACAACCACAACCACAGCAACACTTATCACTTTTCACCAACCGCTCTATGTCCTACTCATCTAAAGCAAATTATGGAACATCCTCCAATGAACTATCGCCAATATGGTCTTCTAAAGTCTCTACCTTTTTGAAGCCCTCACCAATAGGAAAGCAACTACCTATTGGACTTCACTTTTCTAATAATACTCCTTTCTGGAATGCTTCAGCCGAGGCACTTCACGACATGAGAGCAGGTCATGCTTTTGCTGAATCAACTTTTCATGAAGGAAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTCAAGAGTGAAGAAAGTTTGAACTCAGTATCAATTGGGAAGAAAAATGTTTGTGAAACTGCATTGAAGAGGCCAAGAATTGAAACTCCATCTACATTTCCAACTTTTAAGGTTCGGAAAGAGAAGTTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCTTCCGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTCAGTGTTTTGAGTACTCCATATATGAAAAATGGAGCTCCCATTCAACAAAAGCAGGGCTGTGAAGACACAGAAGGGTCAAAACAAGATTTAAGAAGCCGAGGGCTTTGTTTGGTACCGATTTCAAGCACATTCCCGGTGGCTACAGAAACCACTTCAGATCTATGGACACCTACATTGGGAGGGTCACTCCTAAGGTAG 1422 0.403 MAEEFQARICGENWWSIDSTRSVFPLISSSSSPCSVDAGNYRQIDIMDLKETNKSCAEETNNTNNNLVSDSYLGFFDAQKPHKSESSSSASGSGSILIDSTLQMMGFGLNSSTSLSWNQPLLPERNFHSMLQEETVIDSSNSQIQRDWNSPKSFSSDGRSINQVSTFKPTMNQEFSLDQQQSLSSVTSTLLSSSSNRGNFPIGSASYGCPSMLMQRLYEDPDEDNLQPQPQPQQHLSLFTNRSMSYSSKANYGTSSNELSPIWSSKVSTFLKPSPIGKQLPIGLHFSNNTPFWNASAEALHDMRAGHAFAESTFHEGKPNCPSTLLNKLKSEESLNSVSIGKKNVCETALKRPRIETPSTFPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNGAPIQQKQGCEDTEGSKQDLRSRGLCLVPISSTFPVATETTSDLWTPTLGGSLLR. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05007 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 422 IPR036638 GO:0046983
Seca12g05007 473 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 145 453 - -
Seca12g05007 473 FunFam Transcription factor bHLH123 family 365 427 - -
Seca12g05007 473 CDD bHLH_AtbHLH_like 362 412 IPR045239 -
Seca12g05007 473 Gene3D - 365 426 IPR036638 GO:0046983
Seca12g05007 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05007 Seca-Chr12 136313810 136323487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05007 279 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 53.333 1.39e-55 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05007 - - gmx:100784084 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05007 12 136313810 136323487 Seca6g05018 6 117476159 117477121 PCT