Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g05001 | ATGGCGACTCCTCATCTTCCAGAACACTTCAAATGTCCAATTTCTCTCGAAATAATGTCAGACCCAGTGATCTTATCTTCTGGTCACACATTCGATCGCTCCTCAATCCAACGGTGGCTAGACGCCGGTCACCGTACGTGTCCAATTACCAAAACACCCCTCCCTGAACACCCTTCCCTAATCCCAAACCACGCACTCCGAAGCTTAATCTCCAACTACACACTCCTCTCCCCTCTCCACCAACACATTCCCCAACCCGAAACCCTAATTTCCACTCTCTCTTCTCCTTCCTCCACCTCCGATTCCAAAATCGACTCGCTCCGCCAACTCACGCGCCTCTCCAAGCGCGACGCCGCCTTCCGCCGCCGCCTTGCTGACTCCGGCGCAGTCTCCGCCGTCCTCTCCTGCCTCGAATCCGCCGCCGGCGAACCCGCGCTGCAGGAGAAGGTTTTGTCTCTTCTCCTCAACCTCAGCCTCGACGACGACAGCAAAGTTGGCCTTGTCGCCGAGGGCGCCGTCGGGAAGGTCGTCGCCGTCCTCGTCGGCGGCGCCTCGCCGGATTGCCGCGCCGTGGCCGCAACCATAATCACAAGCCTCGCCGTCGTTGAAGTGAACAAGGCAACGATTGGTGCGTTCCCGGCGGCAATCGGAGCTCTGGTGGCGATTCTCCGGGACGGGAAGGGAAGGGAGAGGAAGGAAGCTGCCACCGCGCTTTACGCACTCTGCTGTTTTCCGGATAACCGGAGAAGAGCCGTGAATTGTGGCGCGGTGCCGATTCTGCTGAGGAGTGTGGATTCTGGGCTTGAAAGGGGTGTTGAGGTTATTGGGGTTTTGGCAAAGTGTAAAGAAGGAAGGGAACAAATGGAAGGTTATGGTGGGTGCGTGCGGATTCTAGTTCGTGTGTTGAGGAATGGAAGCTCCAGAGGGATTCAGTATGCACTGTTGGCACTCACTTCGCTCTGTTTTCATAGCCAGCAAATGCTTTTGATGGCCCTGCAAGAAGGGGTTTTGGAAATTGCTGTTGGGTTGCTGGAGGATGATAATGAGAAAGTGAGGAGAAATTCCTCCAATCTGATTCGGGTTCTGCGCGGAGGAAAGAATCAGTTTTGA | 1110 | 0.5559 | MATPHLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKTPLPEHPSLIPNHALRSLISNYTLLSPLHQHIPQPETLISTLSSPSSTSDSKIDSLRQLTRLSKRDAAFRRRLADSGAVSAVLSCLESAAGEPALQEKVLSLLLNLSLDDDSKVGLVAEGAVGKVVAVLVGGASPDCRAVAATIITSLAVVEVNKATIGAFPAAIGALVAILRDGKGRERKEAATALYALCCFPDNRRRAVNCGAVPILLRSVDSGLERGVEVIGVLAKCKEGREQMEGYGGCVRILVRVLRNGSSRGIQYALLALTSLCFHSQQMLLMALQEGVLEIAVGLLEDDNEKVRRNSSNLIRVLRGGKNQF. | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g05001 | 369 | FunFam | RING-type E3 ubiquitin transferase | 70 | 266 | - | - | |
| Seca12g05001 | 369 | FunFam | RING-type E3 ubiquitin transferase | 5 | 76 | - | - | |
| Seca12g05001 | 369 | Pfam | U-box domain | 7 | 73 | IPR003613 | GO:0004842|GO:0016567 | |
| Seca12g05001 | 369 | SUPERFAMILY | ARM repeat | 87 | 362 | IPR016024 | - | |
| Seca12g05001 | 369 | PANTHER | U BOX DOMAIN-CONTAINING | 7 | 360 | - | - | |
| Seca12g05001 | 369 | SUPERFAMILY | RING/U-box | 5 | 74 | - | - | |
| Seca12g05001 | 369 | SMART | arm_5 | 117 | 159 | IPR000225 | GO:0005515 | |
| Seca12g05001 | 369 | SMART | arm_5 | 160 | 201 | IPR000225 | GO:0005515 | |
| Seca12g05001 | 369 | SMART | arm_5 | 324 | 364 | IPR000225 | GO:0005515 | |
| Seca12g05001 | 369 | SMART | arm_5 | 281 | 322 | IPR000225 | GO:0005515 | |
| Seca12g05001 | 369 | Gene3D | - | 83 | 213 | IPR011989 | - | |
| Seca12g05001 | 369 | ProSiteProfiles | U-box domain profile. | 5 | 80 | IPR003613 | GO:0004842|GO:0016567 | |
| Seca12g05001 | 369 | SMART | Ubox_2 | 9 | 73 | IPR003613 | GO:0004842|GO:0016567 | |
| Seca12g05001 | 369 | Gene3D | - | 214 | 368 | IPR011989 | - | |
| Seca12g05001 | 369 | CDD | RING-Ubox_PUB | 7 | 54 | IPR045210 | - | |
| Seca12g05001 | 369 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 77 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g05001 | Seca-Chr12 | 136193279 | 136194388 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g05001 | 6 | 364 | U-box Gene Family | AT4G21350 | 58.808 | 6.25e-142 | 406 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g05001 | - | - | gmx:100785141 | 513.457 |