Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04999 ATGAAGATATTTTACGCTAAAGAGATTCTGTGTCCATTTCTTCTGCTGTTGCTCCTTTCCCCTTCATTCCAATCACTTGACAGCATAACCCAAAACCATCCCCTGAAAGACGGCGACGTTTTGGTCTCCAAAGACCGAGGGACCTTTGCACTTGGTTTCTTCAGTCCGCGAGATTCTAGAAGCCGATACGTTGGGATATGGTACAACAAAATTGCAGAGCAAACGGTTGTGTGGGTTGCAAACAGAGACACCCCTCTGAATGACACTTCCGAAGTTCTTTCCATCAACAAAGGAAACCTCGTACTCCACCGTGGCAATAACCGAAACCTTAATCCAATTTGGTTTTCAAATGTTTCTACCTTAACTGCCAACGCTTCAGCTAAGCTTTTAGACACAGGAAACTTGGTTTTGATCCAAAGTGAAAGGAACAGCAACGTTTTGTGGCAGAGTTTTGATTATCTCGGTAACACTTTGCTTCCGTTCATGAAGCTCGGGTTGGACCGGAAAACCGGTTTGGACCGGTTTCTTACGTCCTGGAAGTCCCCGATCGACCCAGGATCCGGGAACTTGACCTACCGGATCGACCCGACTGGGTTCCCGCAGCTGTTCCTGTACAAGAATCAAGCTCCACTATGGCGGGTCGGGTCATGGACGGGCCATAGATGGAGCGGTGTGCCTGAAATGACTCCGAATTTCATCTTCAATATTAGCTTCATCGACAATGCAGATGAAGTTTCCATAATGTATGGAGTGACGGACCCCATGGTGTTGTCGAGAATGGTGTTGGAAGAAACGGGTCACGTGAGAAGGTTAACGTGGCAACCTCATGAGGAGAAGTGGTTCCAAATCTGGTTTGCTCCGAAAGAGGAGTGCGACAACTTCAGACAATGCGGATTGAACGCGAACTGCGACCCGTATAAAGAAGACAAGTTTGAGTGCGAGTGTTTGCCTGGGTTCGAACCCAAGTCTGAGAGAGAATGCGTTAGGAAGCGAAGCGTATCCACGTGTCGAAGTGGGGAGGGGTTTGTGAAGGTGGCACGTGTGAAGGTACCAGATACTTCGGAGGCACGTGTGGATGAGAGACTAGACATGAGAGGGTGTAAGGAGAAATGTTTGAGGGATTGTTCTTGTGCAGCTTATACAAGTGCCAATGAGAGCTCTCAGAGTGGGTGTGTTACTTGGCATGGAGACATGGAAGATACAAGAACATACGCACAAGTGGGACAAGATCTGTATGTACGCGTCGATGCAGTTGAATTAGCTAAATATATGAAAAAACCATATGGTTCTCTTGGCAAGAAGGGGATGGTGGCCATTTTAGTCGTTGGTATATGCTTGTTATTGTTTTTTGGGATCACTTGTTTGTATTGGTTTGTAAAAGTCAGGAAACAAGATGTCAAATTTCACTGTGTTCAAAAGTGTTTGTTTCTTTGTTTGATAATAGTGACAAGGGATCGCAAGTTTTCATTTCGTCTTGACTTTGAGGACTCCCCAAATCATCAAGAATTTGAAAGTACGAAAAATTCAGATTTACCATTCTTTGATCTTAGCTCCATAGCTGCTGCAACAGACAATTTCTCTACAGATAACAAGCTTGGTCAAGGTGGTTTTGGTTCTGTTTATAAGGGTGTCCTGAGTAATGGAATGGAAATAGCAGTGAAGAGACTGTCAAAGTATTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGATTGTTTTGATTTCAAAGCTTCAACACAGAAATCTTGTGAGGATCTTAGGTTGTTGCATTCAGGGAGAGGAGAAGATGTTAATCTATGAGTATTTGCCAAACAAAAGCTTAGACTCTTTCATTTTTGATGAGTCTAAAAGGTCAGAGTTAGACTGGGAAAAAAGATTTGATATCATCTGTGGGGTTGCTAGAGGGATCTTATACCTTCATCAAGATTCACGATTAAGAATCATTCATAGAGACTTAAAGGCCAGCAATGTCTTGCTAGACTCTGCATTGAACCCAAAAATTGCAGATTTTGGCATGGCTAGGATATTTGGTGGAGATCAAATTGAAGCAAACACAAATCGAGTTGTTGGAACCTATGGCTACATGTCACCAGAATATGCCATGAAAGGACATTTTTCAATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATTGTTACTGGCAGAAAGAATAGCATTGAATATGAGGACATTACATCCACAAGTTTAGTTGGACATATATGGGATCTATGGAGAGAAGACAAAGCTATAGAGATTATTGATCAAACATTAAGGGAGTCATGCTCTGACTACGAAGTCCAAAGATGCATCCAAATTGGGCTTTTATGTGTACAAGATTATGCCATAGACAGACCATCTATGTCAACAGTTGTTTCCATGTTGGGTAATGACTCAACTCTTCCTATTCCAAAACAACCAGCATTTATTTTCAAGAGAAATAATTGTGATAGTTCAACCAGTGAAGGAATTTATTCAGTGAATGAGGTAAGTATGACTATGATTGAAGCACGATAG 2523 0.4229 MKIFYAKEILCPFLLLLLLSPSFQSLDSITQNHPLKDGDVLVSKDRGTFALGFFSPRDSRSRYVGIWYNKIAEQTVVWVANRDTPLNDTSEVLSINKGNLVLHRGNNRNLNPIWFSNVSTLTANASAKLLDTGNLVLIQSERNSNVLWQSFDYLGNTLLPFMKLGLDRKTGLDRFLTSWKSPIDPGSGNLTYRIDPTGFPQLFLYKNQAPLWRVGSWTGHRWSGVPEMTPNFIFNISFIDNADEVSIMYGVTDPMVLSRMVLEETGHVRRLTWQPHEEKWFQIWFAPKEECDNFRQCGLNANCDPYKEDKFECECLPGFEPKSERECVRKRSVSTCRSGEGFVKVARVKVPDTSEARVDERLDMRGCKEKCLRDCSCAAYTSANESSQSGCVTWHGDMEDTRTYAQVGQDLYVRVDAVELAKYMKKPYGSLGKKGMVAILVVGICLLLFFGITCLYWFVKVRKQDVKFHCVQKCLFLCLIIVTRDRKFSFRLDFEDSPNHQEFESTKNSDLPFFDLSSIAAATDNFSTDNKLGQGGFGSVYKGVLSNGMEIAVKRLSKYSGQGIEEFKNEIVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDSFIFDESKRSELDWEKRFDIICGVARGILYLHQDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMKGHFSIKSDVYSFGVLLLEIVTGRKNSIEYEDITSTSLVGHIWDLWREDKAIEIIDQTLRESCSDYEVQRCIQIGLLCVQDYAIDRPSMSTVVSMLGNDSTLPIPKQPAFIFKRNNCDSSTSEGIYSVNEVSMTMIEAR. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04999 840 SMART serkin_6 526 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04999 840 Gene3D Transferase(Phosphotransferase) domain 1 602 804 - -
Seca12g04999 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 789 - -
Seca12g04999 840 PIRSF SRK 1 840 IPR024171 GO:0004674
Seca12g04999 840 Gene3D - 23 151 IPR036426 -
Seca12g04999 840 ProSiteProfiles Bulb-type lectin domain profile. 26 150 IPR001480 -
Seca12g04999 840 Pfam PAN-like domain 336 400 IPR003609 -
Seca12g04999 840 ProSiteProfiles PAN/Apple domain profile. 336 416 IPR003609 -
Seca12g04999 840 CDD EGF_CA 290 323 - -
Seca12g04999 840 ProSitePatterns EGF-like domain signature 2. 313 327 IPR000742 -
Seca12g04999 840 Pfam Domain of unknown function (DUF3403) 799 840 IPR021820 GO:0004674
Seca12g04999 840 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Seca12g04999 840 ProSiteProfiles Protein kinase domain profile. 526 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04999 840 CDD STKc_IRAK 532 797 - -
Seca12g04999 840 ProSiteProfiles EGF-like domain profile. 287 328 IPR000742 -
Seca12g04999 840 Pfam Protein tyrosine and serine/threonine kinase 528 797 IPR001245 GO:0004672|GO:0006468
Seca12g04999 840 SMART blect_4 32 154 IPR001480 -
Seca12g04999 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 151 - -
Seca12g04999 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Seca12g04999 840 SMART ntp_6 337 415 IPR003609 -
Seca12g04999 840 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544
Seca12g04999 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Seca12g04999 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 804 - -
Seca12g04999 840 Pfam D-mannose binding lectin 75 180 IPR001480 -
Seca12g04999 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 492 601 - -
Seca12g04999 840 CDD PAN_AP_plant 334 415 - -
Seca12g04999 840 Gene3D Phosphorylase Kinase; domain 1 490 601 - -
Seca12g04999 840 SUPERFAMILY Protein kinase-like (PK-like) 510 813 IPR011009 -
Seca12g04999 840 CDD B_lectin 32 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04999 Seca-Chr12 136032889 136038579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04999 514 840 Receptor kinase-like Gene Family AT4G11530 58.754 6.99e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g04999 PK_Tyr_Ser-Thr 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04999 - - gmx:100812814 1320.84