Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04996 ATGAAACTCAAAGGAAATCCATGCACTCTGCTAAAATATCCTCTCTGCCTTGTCATGAGCCAAAATCATAAACATAAGTTGCATAACAATTGGTTGCTTAACTCTTTGATTCTACTCCTTCTCAGCAACTCATTTTGCTCTTGTTCTGATACCATATCTACTGACAAAGCCATCAGAGATGGCGAGCTTCTTGTTTCTAAAGCTAAAAGGTTTGCTCTTGGATTCTTCAGTCCTGGCAAGTCCACCTCCCGCTATGTTGGAATTTGGTACCATAATTTGGCAGAACAAACTGTTGTTTGGGTTGCAAACAGAGATAGCCCTATCAATGACACCACTGGGGTTCTCTCAATCAACCCAGATGGAAATCTAGTGCTCCACCACAATTTTAGCACCATTCCCATTTGGCCTACCAATGTTTCAGCCACTCAATCAAACAGCACCAATGTTATAGCACAACTCTCAGATATAGCAAACCTTGTTCTGATTCTAAACAACACCAAAACTGTCATCTGGCAAAGCTTTGATTATCCCACAGATACCTTGCTTCCATATCTAAGGCTGGGTTTTGACAGAAGAATTAACCAAAGCTGGTTCATCCAATCCTGGAAGAATGATGATGACCCAGGAACAGGTAGCTTCACGCTGAAATTCAGCACCATTGGGAAACCGCAGTTGTTTGTGCACAACCATAACCTTCCATGGTGGCGAGGTGGATCATGGAATGGGGAATTATTTATGGGTGTACCCAATATGAAACGAGATATGGATACTTTAAATACCTCTTTTGTGGAAGGTGACAACTATGTAGCATTCTCATTTACCCCGTTTGACAAGTCCCCCATCTCCAGGATAGTAATTCAGCAATCAGGTTTCCTTCAAGCATTGGAATGGGATAGCCAAAAGAGTCAATGGAACCGGTATTGGTCAGAACCAAAAAATGAATGTGATAACTATGGAACCTGTGGATCAAACAGCAATTGTGACCCTTTGAACTTTGAGGATTTTCGGTGTACTTGTCTACCTGGTTTTGAACCCAGATTCCCACATGATTGGTATGAAAACAGAGATGGGTCAGGAGGGTGTGTGAGGAAGAAAGGTGCATCTGTTTGTGGGAATGGAGAAGGGTTTGTCAAAATTGAAGGCTTGAAGGTTCCTGATACATCTGTGGCAATTGCGAAAGGGGGTTTGAGTTTGGAAGAATGTGAGCAGGAATGCTTGAGAATCTGCTCTTGTACTGCTTATGCAGTTGCTGATGCCAGGAATGGTGGAAGTGGCTGCTTGGCATGGCATAGCAATTTAATGGACACACAAAAGCTAAGTGATCAAGGTCAAGATTTAATTGTGCGTGTTGATGCAGTTGAACTAGCCAATTACTATAAAAAACGTAATGGAGTACTTGGTAAAAGGAGGATGGTTGCAATTCTTACAGCTTCTGTACTTGCAATTATCCTTCTCCTCTCTTGTGTATATTACCTGTGGAAGATAAAAAGAAATGACAGAATGATGCAGCAATTAAACCAAGATTCCCCCAGAGCAGATAATGATATTCAAAGCAACACACATCCAAATCTTCCCTTTTTCAGCTTTAAAAGTATAATGGAAGCCACAAGAAATTTCGGTCATGAGAATAAGCTTGGGCAAGGTGGATTTGGTTCTGTCTATAAGGGATGCCTAGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAGATTCAGGTCAAGGGATAGAAGAGTTTAAAAATGAAGTTAGACTACTAGTCAAACTTCAACACAGAAATCTCGTGAGGTTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATTCTAGTTTATGAATACCTACCAAAAAAAAGCTTGGACTTCTTTATATTCGATAGAAACCAAAGACCATCCTTGGATTGGGATGAGCGTTTTGAAATTATTTTTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCACCGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCGAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGAACAAAAAGAGTGGTTGGAACATATGGATATATGTCACCAGAATACGCAATGGCAGGACGATATTCAACAAAATCTGATGTCTTCAGTTATGGGGTCTTACTACTAGAGATTGTTGCTGGCAAGAGGAACACTGATTGTGAAACAGGAAGAGCATCCCTGAATTTAATTGGACATGTGTGGATACTTTGGACGGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTAGGTCAGTCTTATCCTCCTGCTGTAGTTCTGAGGTGCATTCAGATTGGACTCCTTTGTTCTGACACCTTATTTGCTGACAAAGTCATAACAGATGGTGAGCTTCTTGTTTCTAAAGCCAAAACGTTTGCTCTTGGATTCTTCAGTCCAGGCAAGTCTACCTCCCGCTATGTTGGAATTTGGTACAACAATTTGGCAGAACAAACTGTTGTTTGGGTTGCAAACAGAGATAGTCCCATCAATGACACCTCTGGAGTTCTCTCAATCAACCCAGATGGGAATCTAGTGCTCCACCACAACTATAGCACCATTCCCATTTGGTTTACCAATGTATCAGCCACTCTATCCAACAGCACCAACGTTATAGCACAACTCTCAGACATAGCAAACCTTATTCTCATTCAGAACAACACCAAAACTGTCATCTGGCAAAGCTTTGATCATCCTTCAGACACCTTGCTTCCATATCAAAGACTGGGTTTTGACAGAAGAATTAACCCGAGCTGGTTCCTCCAATCCTGGAAGACAGATGATGACCCAGGAATAGGTACTTTCACATTGAAATTCAGCACAAATAGGATACCGCAGATGTTAATGTACAAACAGAACCTTCCTTGGTGGAGAGGTGGACATTGGAATGGGGAACTATTTGTGGGTACACCCAATATGAAACGAGATGGGATCACTTGTAACTTTTCTTTTGTGGAAGATGACAACTATGTAGCACTCTCATTTAACATGTTTGATAAGTCCGTTATCGCCAGGGCAGTAGTTCAGCAATCAGGTTTCTTTCAATCATTTACGTGGAATAACCAAAAGAGTCAATGGAACCGGTACTGGTCAGTACCAACAAATCAATGTGATAACTATGGAAGCTGTGGATCAAACAGTAACTGTGACCCTTTAAACTTTGAGGACTTTAAGTGTACATGTCTGCCTGGTTTTGAGCCAAAATTCCCACATGATTGGTATGAGAACAGAGATGGGTCTGGAGGGTGTGTGAGGAAGAAAGGTGCATCCATTTGTGGGAACGGAGAAGGGTTTGTCAAAATTGAAGGCTTGAAGCTTCCTGATACATCTGTGGCAATCGCCAAAAGGGGTTTGAGTTTGGAAGAATGTGAGAAGGAATGCTTGAGAAACTGCTCTTGTACTGCTTATTCAGTTGCTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGGAACTTAATGGACACGCTAAAACTAAGTGATCAAGGCCAAGATTTATTTGTACGTGTTGATGCAGTTGAACTAGCCAATTACTACAAAAAGAGTAAAGGAGTACTTGATAAAAAGAGGATGGTTGAATTTCTGGTAGCTTCTGTACTTACAATTGTCCTTCTCCTATCCTGTGTATATTACCTGTGGAAGAGAAAAAGAAAAGATAAGATGAGGTGGCATTTAAACCAAGATTCCCCCATAGAAGAGAACAATGTACAGAGCAACACACATCAAAATCTTCCCTTTTTCAGCCTTAAGATCATAATGGCAGCCACGAGAAATTTTTGTTATGAGAATAAGCTTGGGCAAGGTGGATTTGGCTCTGTCTATAAGGGCCACCTAGCTAGTGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAAATTCAGGTCAAGGAACAGAAGAGTTTAAAAATGAAGTTACATTACTAGTTAAACTCCAACACAGAAATCTCGTGAGGTTGCTCGGTTACTGCTTTGAGAAAGAAGAAAGGATGCTAATTTATGAATACCTACCAAACAAAAGCTTGGACTTCTTTATATTTAATGAAAACCAAAGGTCATCACTGGATTGGGGTAAGCGTTTTGAAATTATTTTTGGGATTGCTCGAGGCGTTTTGTATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCCAGCAACGTTCTCCTTGATGCTGCATTGAATCCCAAAATCTCAGATTTTGGCATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGCACAAAAAGAGTGGTTGGAACATATGGCTATATGTCACCAGAGTATGCAATGGAAGGGAGATATTCAACAAAATCTGATGTCTTCAGTTATGGAGTCTTACTACTAGAGATTATTGCTGGAAAGAGGAACACAGATTGTGAAACAGGAAGAGCCTCCCCAAATTTAATTGGACATGTGTGGATGCTTTGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTAGGCCATTCTTATCCTCCTGCTCTAGTTCTGAGGTGCATTCAGATTGGACTCTTGTGCGTGCAAGAAAATGCTATTAATAGACCATCCATGTTAGAAGTTGTTTTCATGCTAGGCAATGAAACACCTCTTTGCTCACCCCAAAAGCCGGCATTTTTATTCAATGGCAACCATGATTTGCAAGAGTCATCGGGAGGAACATGTTCAATAAATGAACTAACAGAAACTACCATCAGTGCTCGCTAA 4794 0.4072 MKLKGNPCTLLKYPLCLVMSQNHKHKLHNNWLLNSLILLLLSNSFCSCSDTISTDKAIRDGELLVSKAKRFALGFFSPGKSTSRYVGIWYHNLAEQTVVWVANRDSPINDTTGVLSINPDGNLVLHHNFSTIPIWPTNVSATQSNSTNVIAQLSDIANLVLILNNTKTVIWQSFDYPTDTLLPYLRLGFDRRINQSWFIQSWKNDDDPGTGSFTLKFSTIGKPQLFVHNHNLPWWRGGSWNGELFMGVPNMKRDMDTLNTSFVEGDNYVAFSFTPFDKSPISRIVIQQSGFLQALEWDSQKSQWNRYWSEPKNECDNYGTCGSNSNCDPLNFEDFRCTCLPGFEPRFPHDWYENRDGSGGCVRKKGASVCGNGEGFVKIEGLKVPDTSVAIAKGGLSLEECEQECLRICSCTAYAVADARNGGSGCLAWHSNLMDTQKLSDQGQDLIVRVDAVELANYYKKRNGVLGKRRMVAILTASVLAIILLLSCVYYLWKIKRNDRMMQQLNQDSPRADNDIQSNTHPNLPFFSFKSIMEATRNFGHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGIEEFKNEVRLLVKLQHRNLVRLLGCCFEKEERILVYEYLPKKSLDFFIFDRNQRPSLDWDERFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQARTKRVVGTYGYMSPEYAMAGRYSTKSDVFSYGVLLLEIVAGKRNTDCETGRASLNLIGHVWILWTEGRALDIVDSTLGQSYPPAVVLRCIQIGLLCSDTLFADKVITDGELLVSKAKTFALGFFSPGKSTSRYVGIWYNNLAEQTVVWVANRDSPINDTSGVLSINPDGNLVLHHNYSTIPIWFTNVSATLSNSTNVIAQLSDIANLILIQNNTKTVIWQSFDHPSDTLLPYQRLGFDRRINPSWFLQSWKTDDDPGIGTFTLKFSTNRIPQMLMYKQNLPWWRGGHWNGELFVGTPNMKRDGITCNFSFVEDDNYVALSFNMFDKSVIARAVVQQSGFFQSFTWNNQKSQWNRYWSVPTNQCDNYGSCGSNSNCDPLNFEDFKCTCLPGFEPKFPHDWYENRDGSGGCVRKKGASICGNGEGFVKIEGLKLPDTSVAIAKRGLSLEECEKECLRNCSCTAYSVADVRNGGSGCLAWHGNLMDTLKLSDQGQDLFVRVDAVELANYYKKSKGVLDKKRMVEFLVASVLTIVLLLSCVYYLWKRKRKDKMRWHLNQDSPIEENNVQSNTHQNLPFFSLKIIMAATRNFCYENKLGQGGFGSVYKGHLASGQEIAVKRLSKNSGQGTEEFKNEVTLLVKLQHRNLVRLLGYCFEKEERMLIYEYLPNKSLDFFIFNENQRSSLDWGKRFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAALNPKISDFGMARIFGEDQIQASTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVLLLEIIAGKRNTDCETGRASPNLIGHVWMLWTEGRALDIVDSTLGHSYPPALVLRCIQIGLLCVQENAINRPSMLEVVFMLGNETPLCSPQKPAFLFNGNHDLQESSGGTCSINELTETTISAR. 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04996 1597 ProSiteProfiles PAN/Apple domain profile. 1114 1195 IPR003609 -
Seca12g04996 1597 Gene3D Phosphorylase Kinase; domain 1 499 614 - -
Seca12g04996 1597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 790 918 - -
Seca12g04996 1597 Pfam Protein tyrosine and serine/threonine kinase 1286 1551 IPR001245 GO:0004672|GO:0006468
Seca12g04996 1597 Pfam Protein tyrosine and serine/threonine kinase 542 738 IPR001245 GO:0004672|GO:0006468
Seca12g04996 1597 ProSiteProfiles EGF-like domain profile. 311 349 IPR000742 -
Seca12g04996 1597 SUPERFAMILY Protein kinase-like (PK-like) 1264 1569 IPR011009 -
Seca12g04996 1597 Gene3D Hepatocyte Growth Factor 1112 1192 - -
Seca12g04996 1597 Gene3D Hepatocyte Growth Factor 368 448 - -
Seca12g04996 1597 SMART serkin_6 539 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04996 1597 SMART serkin_6 1283 1553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04996 1597 ProSiteProfiles EGF-like domain profile. 1055 1093 IPR000742 -
Seca12g04996 1597 Gene3D Phosphorylase Kinase; domain 1 1257 1358 - -
Seca12g04996 1597 CDD B_lectin 58 177 IPR001480 -
Seca12g04996 1597 ProSiteProfiles Bulb-type lectin domain profile. 793 918 IPR001480 -
Seca12g04996 1597 Pfam PAN-like domain 370 436 IPR003609 -
Seca12g04996 1597 Pfam PAN-like domain 1114 1180 IPR003609 -
Seca12g04996 1597 CDD PAN_AP_plant 1115 1194 - -
Seca12g04996 1597 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Seca12g04996 1597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1359 1562 - -
Seca12g04996 1597 Gene3D - 798 988 - -
Seca12g04996 1597 SMART ntp_6 371 450 IPR003609 -
Seca12g04996 1597 SMART ntp_6 1115 1194 IPR003609 -
Seca12g04996 1597 Gene3D - 45 174 IPR036426 -
Seca12g04996 1597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Seca12g04996 1597 CDD STKc_IRAK 545 792 - -
Seca12g04996 1597 ProSiteProfiles Protein kinase domain profile. 1283 1568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04996 1597 FunFam Os04g0303100 protein 832 976 - -
Seca12g04996 1597 SUPERFAMILY alpha-D-mannose-specific plant lectins 98 208 IPR036426 -
Seca12g04996 1597 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 794 1546 - -
Seca12g04996 1597 CDD PAN_AP_plant 371 450 - -
Seca12g04996 1597 ProSitePatterns Protein kinases ATP-binding region signature. 1289 1311 IPR017441 GO:0005524
Seca12g04996 1597 Gene3D Transferase(Phosphotransferase) domain 1 615 797 - -
Seca12g04996 1597 Gene3D Transferase(Phosphotransferase) domain 1 1359 1560 - -
Seca12g04996 1597 CDD B_lectin 799 921 IPR001480 -
Seca12g04996 1597 Pfam D-mannose binding lectin 97 203 IPR001480 -
Seca12g04996 1597 Pfam D-mannose binding lectin 841 947 IPR001480 -
Seca12g04996 1597 CDD STKc_IRAK 1289 1554 - -
Seca12g04996 1597 Pfam S-locus glycoprotein domain 979 1091 IPR000858 GO:0048544
Seca12g04996 1597 Pfam S-locus glycoprotein domain 235 346 IPR000858 GO:0048544
Seca12g04996 1597 SUPERFAMILY Protein kinase-like (PK-like) 520 794 IPR011009 -
Seca12g04996 1597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1404 1416 IPR008271 GO:0004672|GO:0006468
Seca12g04996 1597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 503 614 - -
Seca12g04996 1597 CDD EGF_CA 313 346 - -
Seca12g04996 1597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1248 1358 - -
Seca12g04996 1597 ProSiteProfiles Bulb-type lectin domain profile. 49 174 IPR001480 -
Seca12g04996 1597 ProSiteProfiles PAN/Apple domain profile. 370 451 IPR003609 -
Seca12g04996 1597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 615 809 - -
Seca12g04996 1597 SUPERFAMILY alpha-D-mannose-specific plant lectins 842 952 IPR036426 -
Seca12g04996 1597 SMART blect_4 799 921 IPR001480 -
Seca12g04996 1597 SMART blect_4 55 177 IPR001480 -
Seca12g04996 1597 ProSiteProfiles Protein kinase domain profile. 539 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04996 1597 FunFam Os04g0303100 protein 88 232 - -
Seca12g04996 1597 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 44 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04996 Seca-Chr12 135972658 135994277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04996 527 820 Receptor kinase-like Gene Family AT3G45860 56.291 2.00e-102 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g04996 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04996 - - qlo:115991219 1592.02