Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04995 ATGAAGAAAGTTATAGGAGCTGCCTATGGTATAGCAAAAAGTTGCGTGGGGATGGGTTCGATAAGTGTGATGAGACCAGAGTTGGTGAAGTCTACCTTCCCTGTTGTTATGGTTCGAGTTTTGGGTATTTATGGCCTTATTACTGTTGTCGTGATCAGTACTGGTATTAATCCCAAGGCCAAATCTTATTACTTCTTTGATGGTTATGCCCATGTCTCCTATGGTCTTTACCTGCAGGCTGGCTAG 246 0.4309 MKKVIGAAYGIAKSCVGMGSISVMRPELVKSTFPVVMVRVLGIYGLITVVVISTGINPKAKSYYFFDGYAHVSYGLYLQAG. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04995 81 PRINTS Vacuolar ATP synthase 16kDa subunit signature 7 31 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca12g04995 81 PRINTS Vacuolar ATP synthase 16kDa subunit signature 78 81 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca12g04995 81 NCBIfam V-type ATPase subunit C 4 77 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca12g04995 81 Gene3D - 1 79 IPR035921 -
Seca12g04995 81 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04995 Seca-Chr12 135907997 135908242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04995 5 76 Primary Pumps ATPases(2) AT4G34720 75.342 2.13e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04995 K02155 - zju:107420369 106.301