Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g04993 | ATGAGAGGCTTCACTACCCTCCTCTCTTTCTTCCTTTTATGTTTCTCCACTTTACTCACTTTTTTCTCCACACCATCAACCTCTTCCGATACCTTAACAGCAACCCAATTCCTCAGAATCAACCAAACCCTCTCATCCCCAAAAGGAATTTTCCAGCTGGGTTTCTTTCCTCCCACCAATTCCATTTCCACCTGGTACTTGGGCATATGGTACAAAACCATTGATGATAAAACAGTGGTTTGGGTCGCAAACAGAGACACCCCACTTCAGAATTCCACTGGGTTTCTCAAGATAACCGAAAGTGGCAACCTCGTTCTTATCGACCAATCCGAGAAACCCGTGTGGTCCTCCAATCAAACCAAAACAGCTACCAACCCAGTTCTTCAGCTTTTGGATTCTGGCAATTTGGTTCTGAGAGAAGCAAACCAGAATGACCCCACAAAATTTCTGTGGCAGAGCTTTGATTACCCAACAGATACCTTGTTACCTGGGATGAAGCTTGGTTGGAACTTTGACACAGGCATGGAGAGGCACATAAACTCATGGAAAATCACAGATCAAGACCCTTCAAGCGGTGACATTTCTTTCAAGCTAGATTTCCATGGCCTCCCAGAAATCTTCCTGTGGAGAAAAGATAAGAGAATATACAGAAGTGGACCTTGGAATGGTAAAAGATTCAGTGGGGTACCAGAGATGCAACCTGTTACAGATTCTATTAAATTCATGTTCTTTGTAGATGAGCATGAGGCGTATTATACATTCTCAATTGGGAATGAATCCTTGTTTTCAAGGCTCTCTGTGAATTCAATTGGGGAACTTCAACGCTTTACATGGATAGCAAGCACACAAAATTGGAACAAATTTTGGTATGCACCTAAAGACCAATGTGATAATTACAAAGAGTGTGGTCCATTTGGTATTTGTGATACAAATGCTTCACCGGTTTGTCAGTGTGTGAAGGGGTTTCGCCCCAAGAACCAGCAGGCGTGGAATTTGAGAGATGGATCTGATGGGTGTGTGAGGAACACAGAATTGGGGTGTGGGAGTGACAAGTTTTTGCTTATGCAGAATGTGAAGTTGCCAGAGACAACCAGAGTGTTTGTGAACAGGAGCATGGACCTTATGGAGTGTAGAGATTTGTGCCACAGGAATTGTTCCTGCACTGGTTATGCCAACATTGAGATTATCAATGGAGGAAGTGGTTGTGTGATGTGGGTTGGTGAGCTCATAGACTTGAGGCAGTACCCTGCAGGTGGACAAGATCTCTATGTCAGATTGGCAGCTTCTGATGTTGATGACATAGGATTTGGAGGTGATTCTCACAAGACAAATACAGCTAAGACTGTAGGCATTATCATTGGTGGTGCAGCTTTGATACTTTTGGCATTGGGTCTCTTTTTCTTATGGAAGAAGAAGTTGCAATGTATATTGAAAAGGAAGACTGAACACAGAGGTTCTTTAGAAAGAAGTCAAGATTTGCTAATGAGTGAGGTGGTGTTCTCAAGTAAAAGAGAACAGTCAGGTGAAAGGAACATGGATGACCTAGAGTTGCCATTGTTTGATTTTAATACCATAACAATGGCTACAAACAACTTCTCTGAAGCAAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAAAGGCAGGTTGGTAGAAGGTCAGGAAATTGCTGTCAAGAGATTGTCAAAAACTTCTGGGCAAGGTGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTAGTGTATGAGTACATGGAAAACAGAAGCCTTGATGCTATTTTGTTTGACAAAGTAAAAAGATCCTCTCTGAACTGGCAAAGGCGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTACACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGCAACATTTTACTTGACAAAGAGATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTTGGTGCAGACCAGACAGAAGCAAATACAATGAGAGTTGTTGGAACATATGGCTATATGGCCCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTGCTGGAGATCATAAGTGCGAAAAAGAACAGAGGATTCTATTTTGCAAACAAGGAGTTGAATCTTCTAGGACATGGGTGGAAGCTGTGGAGAGAAGGAAATGCATTGGAACTGATTGATTCATCCATTGACAAGTCATATTCACCATCTGAAGTTCTTAGATGCATACAAGTTGGGCTCTTATGTGTACAAGAGCGAGCAGAAGATAGGCCAACAATGTCTTCAGTGGTTTTGATGCTGAGTAGTGAAACTGCAACAATGCCTCAGCCCAAAAACCCAGGGTTTTGCCTAGGAAGGAATCAAATGGAAACTGATTCATCTTCAAGTAAACAAGATGAATCATTCACTGTGAACCAAGTCACTGTCACAATGCTAGACCAAAATTATAAACATAAGCTACATAACAATTGGCTTCTTACCAATTTGATTCTACTGCTTCTCAGCTTCTCATTTTGCTCTTGTTCTGATACCTTATTTGCTGACAAAGTCATAACAGATGGTGAGCTTCTTGTTTCTAAAGCTAAAACTTTTGCTCTTGGATTCTTCAGTCCAGGCAAATCCACCTCCCGTTATGTTGGAATTTGGTACAACAATTTGGCAGAACAAACTGTTGTTTGGGTTGCAAACAGAGATAGTCCCATCAATGACACCTCTGGAGTTCTCTCAATCAACCCAGATGGAAATCTAGTGCTTCACCACAACTATAGCACCTTTCCCATTTGGTCTACCAATGTTTCAGCCTCTCAATCAAACAGCACCAATGTTATAGCACAGCTCTCAGATATAGGAAACCTTGTTCTGATTCTAAACAACACCAAAAAAGTCATCTGGCAAAGCTTTGATCATCCCACAGACACCTTGCTTCCTTATCTAAAGATGGGTTTTGACAGAAGAACTAACCAGAGTTGGTTCCTCCAATCCTGGAAGACAGATGATGACCCAGGAATAGGTTCCTTCACATTGAAATTCAGTTCAGGTGGGAAACCTCAGATGTTTATGTACAACAAGAACCTTCCTTGGTGGAGAGGTGGACATTGGAATGGGGAACTATTTGTGGGTGTACCTAATATGAAACGAGATATGGCCACTTTTAATGTTTCTTTTGTGGAAGATGATGACTATGTAGCAGTCTCATATAACATGTTTGATAAGTCCATTATCCCCAGGATAGTAGTTCAGCAATCAGGTTTCTTTCAAATATTCACTTGGGATAACCAAAAAGGTCAATGGAACCGTTACTGGTCAGAACCAACAAATCAATGTGATAACTACGGAAGCTGTGGATCAAACAGTAACTGTGACCCTTTGAACTTTGAGGACTTTAAGTGTACTTGTTTACCAGGTTTTGAACCAAAATTCCCACGTGATTGGTATGAGAACAGAGATGGGTCAGGAGGGTGTGTGAGGAAGAAAGGTGCATCTGTTTGTGGGAATGGAGAAGGGTTTGTCAGAGTTGAAGGCTTGAAGGTACCTGATATATCTGTGGCAATTGTTAAAAGTGGTTTGAATTTGGAAGAATGTGAGAAGGAATGCTTGAGAAACTGCTCTTGTACTGCTTATTCAGTTGCTGATGTGAGGAATGGTGGAAGTGGGTGTTTGGCATGGCATGGGAATTTAATGGACACACAAAAACTAAGTGATCAAGGTCAAGATTTATTTGTACGTGTTGATGCAGTTGAACTAGGTATTCCCTCCCAAAGAATAATACCACTCAACTTTGTGAGTTGCTTGAAATCTTATCTCATGGCATTTGTAATTTCAGATAAAATGATGCAGAAGTTAAACAAAGATTCTCCTAGAGAAGAGAACGATGTTCAAAGTAACACACATCCAAATCTTCCCTTTTTCAACTTTAAAACAATAATGGCAGCCACAAGAAATTTTAGTCATGAGAATAAGCTTGGTCAAGGTGGATTTGGCTCTGTCTATAAGGGCTGCCTAGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAGATTCAGGTCAAGGGACAGAAGAGTTTAAAAATGAAGTTACATTACTAGTTAAACTCCAACACAGAAATCTTGTGAGGTTGCTCGGTTGCTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTATGAATACCTACCAAACAAAAGCTTGGACTTCTTTATATTTGATAGAAACCAAAGACCATCCTTGGATTGGAGCAAGCGTTTTGAAATTATTTTTGGTATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCACAGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCAAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACAAAAAGAGTGGTTGGAACATATGGCTATATGTCACCAGAGTATGCAATGGAAGGGAGATATTCAACAAAATCTGATGTCTTCAGTTATGGGGTCTTACTACTAGAGATTATTGCTGGCAAGAGGAACACAGATTGTGAAACAGGAAGAGCCTCCCCAAATTTAATTGGACATGTGTGGATGCTTTGGACAGAAGGAAGGGCCTTGGATATTGTTGATTCAACACTAGGCCAGTCTTATCCTCCTGCTCTAGTTCTGAGATGCATTCAAATTGGACTCTTATGCGTGCAAGAAAATGCTATCAATAGACCATCCATGTTAGAAGTTGTTTTCATGCTAGGCAATGAAGCACCTCTTTGTTCACCCCAAAAGCCAGCATTTTTATTCAATGTCAACCAAGATTTGCAAGAGTCATCAACTTCAGGAGGAGCATGTTCAATAAATGAAGTAACAACAACTACCATCAGTGCTCGCTAA | 5004 | 0.4053 | MRGFTTLLSFFLLCFSTLLTFFSTPSTSSDTLTATQFLRINQTLSSPKGIFQLGFFPPTNSISTWYLGIWYKTIDDKTVVWVANRDTPLQNSTGFLKITESGNLVLIDQSEKPVWSSNQTKTATNPVLQLLDSGNLVLREANQNDPTKFLWQSFDYPTDTLLPGMKLGWNFDTGMERHINSWKITDQDPSSGDISFKLDFHGLPEIFLWRKDKRIYRSGPWNGKRFSGVPEMQPVTDSIKFMFFVDEHEAYYTFSIGNESLFSRLSVNSIGELQRFTWIASTQNWNKFWYAPKDQCDNYKECGPFGICDTNASPVCQCVKGFRPKNQQAWNLRDGSDGCVRNTELGCGSDKFLLMQNVKLPETTRVFVNRSMDLMECRDLCHRNCSCTGYANIEIINGGSGCVMWVGELIDLRQYPAGGQDLYVRLAASDVDDIGFGGDSHKTNTAKTVGIIIGGAALILLALGLFFLWKKKLQCILKRKTEHRGSLERSQDLLMSEVVFSSKREQSGERNMDDLELPLFDFNTITMATNNFSEANKLGQGGFGSVYKGRLVEGQEIAVKRLSKTSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKVKRSSLNWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGADQTEANTMRVVGTYGYMAPEYAMDGNFSVKSDVFSFGVLVLEIISAKKNRGFYFANKELNLLGHGWKLWREGNALELIDSSIDKSYSPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATMPQPKNPGFCLGRNQMETDSSSSKQDESFTVNQVTVTMLDQNYKHKLHNNWLLTNLILLLLSFSFCSCSDTLFADKVITDGELLVSKAKTFALGFFSPGKSTSRYVGIWYNNLAEQTVVWVANRDSPINDTSGVLSINPDGNLVLHHNYSTFPIWSTNVSASQSNSTNVIAQLSDIGNLVLILNNTKKVIWQSFDHPTDTLLPYLKMGFDRRTNQSWFLQSWKTDDDPGIGSFTLKFSSGGKPQMFMYNKNLPWWRGGHWNGELFVGVPNMKRDMATFNVSFVEDDDYVAVSYNMFDKSIIPRIVVQQSGFFQIFTWDNQKGQWNRYWSEPTNQCDNYGSCGSNSNCDPLNFEDFKCTCLPGFEPKFPRDWYENRDGSGGCVRKKGASVCGNGEGFVRVEGLKVPDISVAIVKSGLNLEECEKECLRNCSCTAYSVADVRNGGSGCLAWHGNLMDTQKLSDQGQDLFVRVDAVELGIPSQRIIPLNFVSCLKSYLMAFVISDKMMQKLNKDSPREENDVQSNTHPNLPFFNFKTIMAATRNFSHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGTEEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDRNQRPSLDWSKRFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVLLLEIIAGKRNTDCETGRASPNLIGHVWMLWTEGRALDIVDSTLGQSYPPALVLRCIQIGLLCVQENAINRPSMLEVVFMLGNEAPLCSPQKPAFLFNVNQDLQESSTSGGACSINEVTTTTISAR. | 1668 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g04993 | 1667 | CDD | PAN_AP_plant | 1200 | 1279 | - | - | |
Seca12g04993 | 1667 | CDD | STKc_IRAK | 538 | 803 | - | - | |
Seca12g04993 | 1667 | ProSiteProfiles | PAN/Apple domain profile. | 1199 | 1280 | IPR003609 | - | |
Seca12g04993 | 1667 | Pfam | Domain of unknown function (DUF3403) | 805 | 849 | IPR021820 | GO:0004674 | |
Seca12g04993 | 1667 | Gene3D | Hepatocyte Growth Factor | 1197 | 1277 | - | - | |
Seca12g04993 | 1667 | ProSiteProfiles | Protein kinase domain profile. | 532 | 818 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04993 | 1667 | ProSiteProfiles | EGF-like domain profile. | 1140 | 1178 | IPR000742 | - | |
Seca12g04993 | 1667 | Pfam | PAN-like domain | 1199 | 1265 | IPR003609 | - | |
Seca12g04993 | 1667 | Pfam | PAN-like domain | 347 | 412 | IPR003609 | - | |
Seca12g04993 | 1667 | SMART | ntp_6 | 347 | 426 | IPR003609 | - | |
Seca12g04993 | 1667 | SMART | ntp_6 | 1200 | 1279 | IPR003609 | - | |
Seca12g04993 | 1667 | ProSiteProfiles | PAN/Apple domain profile. | 347 | 427 | IPR003609 | - | |
Seca12g04993 | 1667 | SMART | blect_4 | 884 | 1006 | IPR001480 | - | |
Seca12g04993 | 1667 | SMART | blect_4 | 35 | 157 | IPR001480 | - | |
Seca12g04993 | 1667 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 927 | 1037 | IPR036426 | - | |
Seca12g04993 | 1667 | CDD | B_lectin | 35 | 157 | IPR001480 | - | |
Seca12g04993 | 1667 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 653 | 665 | IPR008271 | GO:0004672|GO:0006468 | |
Seca12g04993 | 1667 | ProSiteProfiles | Protein kinase domain profile. | 1351 | 1636 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04993 | 1667 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 1315 | 1426 | - | - | |
Seca12g04993 | 1667 | ProSitePatterns | Protein kinases ATP-binding region signature. | 538 | 560 | IPR017441 | GO:0005524 | |
Seca12g04993 | 1667 | CDD | STKc_IRAK | 1357 | 1622 | - | - | |
Seca12g04993 | 1667 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 873 | 1003 | - | - | |
Seca12g04993 | 1667 | CDD | B_lectin | 884 | 1006 | IPR001480 | - | |
Seca12g04993 | 1667 | ProSiteProfiles | Bulb-type lectin domain profile. | 878 | 1003 | IPR001480 | - | |
Seca12g04993 | 1667 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 608 | 811 | - | - | |
Seca12g04993 | 1667 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 1427 | 1630 | - | - | |
Seca12g04993 | 1667 | Gene3D | Phosphorylase Kinase; domain 1 | 1309 | 1426 | - | - | |
Seca12g04993 | 1667 | SUPERFAMILY | Protein kinase-like (PK-like) | 515 | 803 | IPR011009 | - | |
Seca12g04993 | 1667 | Pfam | S-locus glycoprotein domain | 1064 | 1176 | IPR000858 | GO:0048544 | |
Seca12g04993 | 1667 | Pfam | S-locus glycoprotein domain | 216 | 326 | IPR000858 | GO:0048544 | |
Seca12g04993 | 1667 | SMART | serkin_6 | 532 | 779 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04993 | 1667 | SMART | serkin_6 | 1351 | 1598 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g04993 | 1667 | ProSiteProfiles | Bulb-type lectin domain profile. | 29 | 151 | IPR001480 | - | |
Seca12g04993 | 1667 | SUPERFAMILY | Protein kinase-like (PK-like) | 1332 | 1642 | IPR011009 | - | |
Seca12g04993 | 1667 | Gene3D | - | 24 | 154 | IPR036426 | - | |
Seca12g04993 | 1667 | Gene3D | - | 874 | 1004 | IPR036426 | - | |
Seca12g04993 | 1667 | Pfam | Receptor serine/threonine kinase | 488 | 522 | IPR022126 | GO:0004674 | |
Seca12g04993 | 1667 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 13 | 794 | - | - | |
Seca12g04993 | 1667 | Pfam | Protein tyrosine and serine/threonine kinase | 535 | 801 | IPR001245 | GO:0004672|GO:0006468 | |
Seca12g04993 | 1667 | Pfam | Protein tyrosine and serine/threonine kinase | 1353 | 1619 | IPR001245 | GO:0004672|GO:0006468 | |
Seca12g04993 | 1667 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 | 497 | 607 | - | - | |
Seca12g04993 | 1667 | CDD | PAN_AP_plant | 343 | 427 | - | - | |
Seca12g04993 | 1667 | Gene3D | Phosphorylase Kinase; domain 1 | 506 | 607 | - | - | |
Seca12g04993 | 1667 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1472 | 1484 | IPR008271 | GO:0004672|GO:0006468 | |
Seca12g04993 | 1667 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1427 | 1628 | - | - | |
Seca12g04993 | 1667 | Gene3D | Transferase(Phosphotransferase) domain 1 | 608 | 815 | - | - | |
Seca12g04993 | 1667 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 78 | 223 | IPR036426 | - | |
Seca12g04993 | 1667 | Pfam | D-mannose binding lectin | 926 | 1032 | IPR001480 | - | |
Seca12g04993 | 1667 | Pfam | D-mannose binding lectin | 78 | 183 | IPR001480 | - | |
Seca12g04993 | 1667 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 25 | 154 | - | - | |
Seca12g04993 | 1667 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1357 | 1379 | IPR017441 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g04993 | Seca-Chr12 | 135884090 | 135900608 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g04993 | 520 | 846 | Receptor kinase-like Gene Family | AT4G11530 | 59.036 | 4.09e-129 | 417 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Seca12g04993 | PK_Tyr_Ser-Thr | 1.2e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g04993 | - | - | mtr:11411809 | 1948.71 |