Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04993 ATGAGAGGCTTCACTACCCTCCTCTCTTTCTTCCTTTTATGTTTCTCCACTTTACTCACTTTTTTCTCCACACCATCAACCTCTTCCGATACCTTAACAGCAACCCAATTCCTCAGAATCAACCAAACCCTCTCATCCCCAAAAGGAATTTTCCAGCTGGGTTTCTTTCCTCCCACCAATTCCATTTCCACCTGGTACTTGGGCATATGGTACAAAACCATTGATGATAAAACAGTGGTTTGGGTCGCAAACAGAGACACCCCACTTCAGAATTCCACTGGGTTTCTCAAGATAACCGAAAGTGGCAACCTCGTTCTTATCGACCAATCCGAGAAACCCGTGTGGTCCTCCAATCAAACCAAAACAGCTACCAACCCAGTTCTTCAGCTTTTGGATTCTGGCAATTTGGTTCTGAGAGAAGCAAACCAGAATGACCCCACAAAATTTCTGTGGCAGAGCTTTGATTACCCAACAGATACCTTGTTACCTGGGATGAAGCTTGGTTGGAACTTTGACACAGGCATGGAGAGGCACATAAACTCATGGAAAATCACAGATCAAGACCCTTCAAGCGGTGACATTTCTTTCAAGCTAGATTTCCATGGCCTCCCAGAAATCTTCCTGTGGAGAAAAGATAAGAGAATATACAGAAGTGGACCTTGGAATGGTAAAAGATTCAGTGGGGTACCAGAGATGCAACCTGTTACAGATTCTATTAAATTCATGTTCTTTGTAGATGAGCATGAGGCGTATTATACATTCTCAATTGGGAATGAATCCTTGTTTTCAAGGCTCTCTGTGAATTCAATTGGGGAACTTCAACGCTTTACATGGATAGCAAGCACACAAAATTGGAACAAATTTTGGTATGCACCTAAAGACCAATGTGATAATTACAAAGAGTGTGGTCCATTTGGTATTTGTGATACAAATGCTTCACCGGTTTGTCAGTGTGTGAAGGGGTTTCGCCCCAAGAACCAGCAGGCGTGGAATTTGAGAGATGGATCTGATGGGTGTGTGAGGAACACAGAATTGGGGTGTGGGAGTGACAAGTTTTTGCTTATGCAGAATGTGAAGTTGCCAGAGACAACCAGAGTGTTTGTGAACAGGAGCATGGACCTTATGGAGTGTAGAGATTTGTGCCACAGGAATTGTTCCTGCACTGGTTATGCCAACATTGAGATTATCAATGGAGGAAGTGGTTGTGTGATGTGGGTTGGTGAGCTCATAGACTTGAGGCAGTACCCTGCAGGTGGACAAGATCTCTATGTCAGATTGGCAGCTTCTGATGTTGATGACATAGGATTTGGAGGTGATTCTCACAAGACAAATACAGCTAAGACTGTAGGCATTATCATTGGTGGTGCAGCTTTGATACTTTTGGCATTGGGTCTCTTTTTCTTATGGAAGAAGAAGTTGCAATGTATATTGAAAAGGAAGACTGAACACAGAGGTTCTTTAGAAAGAAGTCAAGATTTGCTAATGAGTGAGGTGGTGTTCTCAAGTAAAAGAGAACAGTCAGGTGAAAGGAACATGGATGACCTAGAGTTGCCATTGTTTGATTTTAATACCATAACAATGGCTACAAACAACTTCTCTGAAGCAAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAAAGGCAGGTTGGTAGAAGGTCAGGAAATTGCTGTCAAGAGATTGTCAAAAACTTCTGGGCAAGGTGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTAGTGTATGAGTACATGGAAAACAGAAGCCTTGATGCTATTTTGTTTGACAAAGTAAAAAGATCCTCTCTGAACTGGCAAAGGCGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTACACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGCAACATTTTACTTGACAAAGAGATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTTGGTGCAGACCAGACAGAAGCAAATACAATGAGAGTTGTTGGAACATATGGCTATATGGCCCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTGCTGGAGATCATAAGTGCGAAAAAGAACAGAGGATTCTATTTTGCAAACAAGGAGTTGAATCTTCTAGGACATGGGTGGAAGCTGTGGAGAGAAGGAAATGCATTGGAACTGATTGATTCATCCATTGACAAGTCATATTCACCATCTGAAGTTCTTAGATGCATACAAGTTGGGCTCTTATGTGTACAAGAGCGAGCAGAAGATAGGCCAACAATGTCTTCAGTGGTTTTGATGCTGAGTAGTGAAACTGCAACAATGCCTCAGCCCAAAAACCCAGGGTTTTGCCTAGGAAGGAATCAAATGGAAACTGATTCATCTTCAAGTAAACAAGATGAATCATTCACTGTGAACCAAGTCACTGTCACAATGCTAGACCAAAATTATAAACATAAGCTACATAACAATTGGCTTCTTACCAATTTGATTCTACTGCTTCTCAGCTTCTCATTTTGCTCTTGTTCTGATACCTTATTTGCTGACAAAGTCATAACAGATGGTGAGCTTCTTGTTTCTAAAGCTAAAACTTTTGCTCTTGGATTCTTCAGTCCAGGCAAATCCACCTCCCGTTATGTTGGAATTTGGTACAACAATTTGGCAGAACAAACTGTTGTTTGGGTTGCAAACAGAGATAGTCCCATCAATGACACCTCTGGAGTTCTCTCAATCAACCCAGATGGAAATCTAGTGCTTCACCACAACTATAGCACCTTTCCCATTTGGTCTACCAATGTTTCAGCCTCTCAATCAAACAGCACCAATGTTATAGCACAGCTCTCAGATATAGGAAACCTTGTTCTGATTCTAAACAACACCAAAAAAGTCATCTGGCAAAGCTTTGATCATCCCACAGACACCTTGCTTCCTTATCTAAAGATGGGTTTTGACAGAAGAACTAACCAGAGTTGGTTCCTCCAATCCTGGAAGACAGATGATGACCCAGGAATAGGTTCCTTCACATTGAAATTCAGTTCAGGTGGGAAACCTCAGATGTTTATGTACAACAAGAACCTTCCTTGGTGGAGAGGTGGACATTGGAATGGGGAACTATTTGTGGGTGTACCTAATATGAAACGAGATATGGCCACTTTTAATGTTTCTTTTGTGGAAGATGATGACTATGTAGCAGTCTCATATAACATGTTTGATAAGTCCATTATCCCCAGGATAGTAGTTCAGCAATCAGGTTTCTTTCAAATATTCACTTGGGATAACCAAAAAGGTCAATGGAACCGTTACTGGTCAGAACCAACAAATCAATGTGATAACTACGGAAGCTGTGGATCAAACAGTAACTGTGACCCTTTGAACTTTGAGGACTTTAAGTGTACTTGTTTACCAGGTTTTGAACCAAAATTCCCACGTGATTGGTATGAGAACAGAGATGGGTCAGGAGGGTGTGTGAGGAAGAAAGGTGCATCTGTTTGTGGGAATGGAGAAGGGTTTGTCAGAGTTGAAGGCTTGAAGGTACCTGATATATCTGTGGCAATTGTTAAAAGTGGTTTGAATTTGGAAGAATGTGAGAAGGAATGCTTGAGAAACTGCTCTTGTACTGCTTATTCAGTTGCTGATGTGAGGAATGGTGGAAGTGGGTGTTTGGCATGGCATGGGAATTTAATGGACACACAAAAACTAAGTGATCAAGGTCAAGATTTATTTGTACGTGTTGATGCAGTTGAACTAGGTATTCCCTCCCAAAGAATAATACCACTCAACTTTGTGAGTTGCTTGAAATCTTATCTCATGGCATTTGTAATTTCAGATAAAATGATGCAGAAGTTAAACAAAGATTCTCCTAGAGAAGAGAACGATGTTCAAAGTAACACACATCCAAATCTTCCCTTTTTCAACTTTAAAACAATAATGGCAGCCACAAGAAATTTTAGTCATGAGAATAAGCTTGGTCAAGGTGGATTTGGCTCTGTCTATAAGGGCTGCCTAGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAGATTCAGGTCAAGGGACAGAAGAGTTTAAAAATGAAGTTACATTACTAGTTAAACTCCAACACAGAAATCTTGTGAGGTTGCTCGGTTGCTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTATGAATACCTACCAAACAAAAGCTTGGACTTCTTTATATTTGATAGAAACCAAAGACCATCCTTGGATTGGAGCAAGCGTTTTGAAATTATTTTTGGTATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCACAGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCAAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACAAAAAGAGTGGTTGGAACATATGGCTATATGTCACCAGAGTATGCAATGGAAGGGAGATATTCAACAAAATCTGATGTCTTCAGTTATGGGGTCTTACTACTAGAGATTATTGCTGGCAAGAGGAACACAGATTGTGAAACAGGAAGAGCCTCCCCAAATTTAATTGGACATGTGTGGATGCTTTGGACAGAAGGAAGGGCCTTGGATATTGTTGATTCAACACTAGGCCAGTCTTATCCTCCTGCTCTAGTTCTGAGATGCATTCAAATTGGACTCTTATGCGTGCAAGAAAATGCTATCAATAGACCATCCATGTTAGAAGTTGTTTTCATGCTAGGCAATGAAGCACCTCTTTGTTCACCCCAAAAGCCAGCATTTTTATTCAATGTCAACCAAGATTTGCAAGAGTCATCAACTTCAGGAGGAGCATGTTCAATAAATGAAGTAACAACAACTACCATCAGTGCTCGCTAA 5004 0.4053 MRGFTTLLSFFLLCFSTLLTFFSTPSTSSDTLTATQFLRINQTLSSPKGIFQLGFFPPTNSISTWYLGIWYKTIDDKTVVWVANRDTPLQNSTGFLKITESGNLVLIDQSEKPVWSSNQTKTATNPVLQLLDSGNLVLREANQNDPTKFLWQSFDYPTDTLLPGMKLGWNFDTGMERHINSWKITDQDPSSGDISFKLDFHGLPEIFLWRKDKRIYRSGPWNGKRFSGVPEMQPVTDSIKFMFFVDEHEAYYTFSIGNESLFSRLSVNSIGELQRFTWIASTQNWNKFWYAPKDQCDNYKECGPFGICDTNASPVCQCVKGFRPKNQQAWNLRDGSDGCVRNTELGCGSDKFLLMQNVKLPETTRVFVNRSMDLMECRDLCHRNCSCTGYANIEIINGGSGCVMWVGELIDLRQYPAGGQDLYVRLAASDVDDIGFGGDSHKTNTAKTVGIIIGGAALILLALGLFFLWKKKLQCILKRKTEHRGSLERSQDLLMSEVVFSSKREQSGERNMDDLELPLFDFNTITMATNNFSEANKLGQGGFGSVYKGRLVEGQEIAVKRLSKTSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKVKRSSLNWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGADQTEANTMRVVGTYGYMAPEYAMDGNFSVKSDVFSFGVLVLEIISAKKNRGFYFANKELNLLGHGWKLWREGNALELIDSSIDKSYSPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATMPQPKNPGFCLGRNQMETDSSSSKQDESFTVNQVTVTMLDQNYKHKLHNNWLLTNLILLLLSFSFCSCSDTLFADKVITDGELLVSKAKTFALGFFSPGKSTSRYVGIWYNNLAEQTVVWVANRDSPINDTSGVLSINPDGNLVLHHNYSTFPIWSTNVSASQSNSTNVIAQLSDIGNLVLILNNTKKVIWQSFDHPTDTLLPYLKMGFDRRTNQSWFLQSWKTDDDPGIGSFTLKFSSGGKPQMFMYNKNLPWWRGGHWNGELFVGVPNMKRDMATFNVSFVEDDDYVAVSYNMFDKSIIPRIVVQQSGFFQIFTWDNQKGQWNRYWSEPTNQCDNYGSCGSNSNCDPLNFEDFKCTCLPGFEPKFPRDWYENRDGSGGCVRKKGASVCGNGEGFVRVEGLKVPDISVAIVKSGLNLEECEKECLRNCSCTAYSVADVRNGGSGCLAWHGNLMDTQKLSDQGQDLFVRVDAVELGIPSQRIIPLNFVSCLKSYLMAFVISDKMMQKLNKDSPREENDVQSNTHPNLPFFNFKTIMAATRNFSHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSGQGTEEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDRNQRPSLDWSKRFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVLLLEIIAGKRNTDCETGRASPNLIGHVWMLWTEGRALDIVDSTLGQSYPPALVLRCIQIGLLCVQENAINRPSMLEVVFMLGNEAPLCSPQKPAFLFNVNQDLQESSTSGGACSINEVTTTTISAR. 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04993 1667 CDD PAN_AP_plant 1200 1279 - -
Seca12g04993 1667 CDD STKc_IRAK 538 803 - -
Seca12g04993 1667 ProSiteProfiles PAN/Apple domain profile. 1199 1280 IPR003609 -
Seca12g04993 1667 Pfam Domain of unknown function (DUF3403) 805 849 IPR021820 GO:0004674
Seca12g04993 1667 Gene3D Hepatocyte Growth Factor 1197 1277 - -
Seca12g04993 1667 ProSiteProfiles Protein kinase domain profile. 532 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04993 1667 ProSiteProfiles EGF-like domain profile. 1140 1178 IPR000742 -
Seca12g04993 1667 Pfam PAN-like domain 1199 1265 IPR003609 -
Seca12g04993 1667 Pfam PAN-like domain 347 412 IPR003609 -
Seca12g04993 1667 SMART ntp_6 347 426 IPR003609 -
Seca12g04993 1667 SMART ntp_6 1200 1279 IPR003609 -
Seca12g04993 1667 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Seca12g04993 1667 SMART blect_4 884 1006 IPR001480 -
Seca12g04993 1667 SMART blect_4 35 157 IPR001480 -
Seca12g04993 1667 SUPERFAMILY alpha-D-mannose-specific plant lectins 927 1037 IPR036426 -
Seca12g04993 1667 CDD B_lectin 35 157 IPR001480 -
Seca12g04993 1667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Seca12g04993 1667 ProSiteProfiles Protein kinase domain profile. 1351 1636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04993 1667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1315 1426 - -
Seca12g04993 1667 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Seca12g04993 1667 CDD STKc_IRAK 1357 1622 - -
Seca12g04993 1667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 873 1003 - -
Seca12g04993 1667 CDD B_lectin 884 1006 IPR001480 -
Seca12g04993 1667 ProSiteProfiles Bulb-type lectin domain profile. 878 1003 IPR001480 -
Seca12g04993 1667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 811 - -
Seca12g04993 1667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1427 1630 - -
Seca12g04993 1667 Gene3D Phosphorylase Kinase; domain 1 1309 1426 - -
Seca12g04993 1667 SUPERFAMILY Protein kinase-like (PK-like) 515 803 IPR011009 -
Seca12g04993 1667 Pfam S-locus glycoprotein domain 1064 1176 IPR000858 GO:0048544
Seca12g04993 1667 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Seca12g04993 1667 SMART serkin_6 532 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04993 1667 SMART serkin_6 1351 1598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04993 1667 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Seca12g04993 1667 SUPERFAMILY Protein kinase-like (PK-like) 1332 1642 IPR011009 -
Seca12g04993 1667 Gene3D - 24 154 IPR036426 -
Seca12g04993 1667 Gene3D - 874 1004 IPR036426 -
Seca12g04993 1667 Pfam Receptor serine/threonine kinase 488 522 IPR022126 GO:0004674
Seca12g04993 1667 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 794 - -
Seca12g04993 1667 Pfam Protein tyrosine and serine/threonine kinase 535 801 IPR001245 GO:0004672|GO:0006468
Seca12g04993 1667 Pfam Protein tyrosine and serine/threonine kinase 1353 1619 IPR001245 GO:0004672|GO:0006468
Seca12g04993 1667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 497 607 - -
Seca12g04993 1667 CDD PAN_AP_plant 343 427 - -
Seca12g04993 1667 Gene3D Phosphorylase Kinase; domain 1 506 607 - -
Seca12g04993 1667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1472 1484 IPR008271 GO:0004672|GO:0006468
Seca12g04993 1667 Gene3D Transferase(Phosphotransferase) domain 1 1427 1628 - -
Seca12g04993 1667 Gene3D Transferase(Phosphotransferase) domain 1 608 815 - -
Seca12g04993 1667 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 223 IPR036426 -
Seca12g04993 1667 Pfam D-mannose binding lectin 926 1032 IPR001480 -
Seca12g04993 1667 Pfam D-mannose binding lectin 78 183 IPR001480 -
Seca12g04993 1667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 154 - -
Seca12g04993 1667 ProSitePatterns Protein kinases ATP-binding region signature. 1357 1379 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04993 Seca-Chr12 135884090 135900608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04993 520 846 Receptor kinase-like Gene Family AT4G11530 59.036 4.09e-129 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g04993 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04993 - - mtr:11411809 1948.71