Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04986 ATGGGCATGATCATCAGATTCAAAGATGCACTTTTTCTGTTCTCCTTCTCTGTCCTCTGTTTTCATACTCTGTTTTCTCATGCAGCCAACTCCATCACACAATCTGAGTCGATCAAAGATGGTGATGGTGTCACTTTGGTGTCAGATGGTCTCAACTTTGAAATGGGTTTCTTCAGTTTAGATAATTCCTCTATAAGATACGTTGGGATTTGGTACTACAAGGTTCCAGGTTCAGGGTACGTGTGGGTTGCAAACAGAGAAAAACCCATCATAGGCAGAGGAGGGGCTATCACAATCAAAAGTGATGGCAATTTGGTTGTCCTTGATGGAGAGAAGAATGAGATATGGTCAAGTAACTTGTTAAATCCTATGAACAACTCGCAAGCTGTTCTTCATGATGATGGGAACCTTGTTCTTTCAGATAGAGACAATGGCAAAGAGGTGTGGCAGAGCTTTGAGGACCCAAGTGACACATTTCTGCCAGGTATGAAAGTGCCAGTGAGTGGTGGAATGAAGAAGAACGCTTCCTTCAGGTCATGGAAATCAGCAACGGATCCTTCACAAGGAAACTACACAATGAGGGTTGATTCTGAGGCAACACCACAGATAGTGATTTTGGAAGGAGAGAAAAGGAGGTGGAGAAGTGGGTATTGGGATGGTAGAGTATTCACAGGTGTGTCTAATATGACAGGAAGCTATCTATATGGTTTTAGACTTAATGCTGATGATAATGGAGGAAGGTACTTTGTATTTGATGCATTGGATAGCACTGACAAGATAAGGTTTCAGATAAGTTGGGATGGATATGAAAGGCAGTTCAGGTTGAATGAAGATAAAAAACAATGGAATATGATACAAAGTGAGCCTCATAATCAGTGTGAGCTTTATAATTTCTGTGGCAGTTTTGCAGTTTGTGATGTGTCTAATTCACCTTTATGTAGTTGCATACAAGGGTTTGAACCAAGACATTTGGATGAGTGGAATAGAGGGAATTGGTCAGTAGGGTGTAAGAGGATAACTCCACTTAAGGCTGAGAGAGGTAATAGTTCTGGGAATGTGGTTAGTGTTGGAGAAGATGGTTTCTTGGTGCAAAGGAATTTGAAGTTACCTGATTTTGCTAGTTTGGTCAATGCTGCTGATTCTGAGGACTGTGAGCGTAATTGCCACCAGAATAATTCTTGTACTGCATATGCATATGTTCTTGGAATTGGGTGCATGGTTTGGGACATGGAGTTAGTTGATGTTCAACACTTTGCAAATTTTGGAAATACACTCAACATTCGTCTTGCTGATTCTGATTTAGAAAGCTATGATGGTCAGGTTGTAATTACAGCATATGATTTCTATGTCTTCAAATACAGGTGGTGGGGAGAAAAAAACCAAAATTTGGATAATATTAGGTGTTGTGGTGGGGCTGATCTGCCTTGGAGTCATTGTATGGCTGCCTTTTGCAACAATATTAATAGCGATGTACAAGTCATTGGATTTGGACCAACCATAAGTACAGACTTATCAGCAGAAGTTTCACAATCAGCTGACCTTAGCTTGGAAGGGAATCAACTAAGTGGAGCAGAGCTTTCAATGTTCAGTTTTAGTTACATTTTAATGGCAACAAACAATTTCTCTGAAGAAAATAAGCTTGGACAAGGAGGGTTTGGTCCTGTTTATAAGGGAAAGCTTGTAGGGGGAGAAGAAATAGCTGTCAAGAGGCTTTCAAGACGGTCTAGCCAAGGATTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAATTACAACACAGAAACCTGGTTAGGCTATTGGGATGTTCAATTCAAGGGGAAGAAAAGTTACTGGTATATGAATACATGCCAAACAAAAGCTTGGACCGCTTTTTATTTGATCCAGTGAAGCAAACAAAATTAGACTGGACAAAACGTTGTGAAATCATTGAGGGCATTGCAAGAGGGTTACTTTATCTGCACCGGGATTCAAGACTTAGAATAATTCATAGAGATTTAAAAGCAAGCAACATTTTATTGGATGAAAACATGAACCCAAAAATTTCAGACTTTGGCATGGCTAGGATATTTGGGGGGAACCAGAATGAAGCTAATACAAACAGAGTGGTTGGTACATATGGCTATATGTCCCCAGAATATGCAATGGAAGGTCTATTTTCAGTCAAATCTGATGTCTATAGTTTTGGCATATTGCTACTAGAAATTGTGAGTGGCCGCAGGAACACTAGCTTTCGTGACTCAGACGACTCAAGTCTCATAGATTATGCTTGGCGTCTTTGGAGTGAAAAGAGAGAAATGGATTTTGTTGATTCTTCCATCCGTGATTCAAGTCCAAAGAGCAAAGCTTTGAGATGCATACACATAGGGATGTTATGCGTGCAAGATTCGGCAGCTCATAGACCAAACATGTCCTCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTTCCCTTGCCTAAACAACCTTTGCTTACTTCCATTAGGAGATATGAAGAAACAGAATTTAATACCGAAGGCCTTGATATGTCAAATGACTTGTCGGTTACTATGGTGACAGGGAGATAG 2571 0.4033 MGMIIRFKDALFLFSFSVLCFHTLFSHAANSITQSESIKDGDGVTLVSDGLNFEMGFFSLDNSSIRYVGIWYYKVPGSGYVWVANREKPIIGRGGAITIKSDGNLVVLDGEKNEIWSSNLLNPMNNSQAVLHDDGNLVLSDRDNGKEVWQSFEDPSDTFLPGMKVPVSGGMKKNASFRSWKSATDPSQGNYTMRVDSEATPQIVILEGEKRRWRSGYWDGRVFTGVSNMTGSYLYGFRLNADDNGGRYFVFDALDSTDKIRFQISWDGYERQFRLNEDKKQWNMIQSEPHNQCELYNFCGSFAVCDVSNSPLCSCIQGFEPRHLDEWNRGNWSVGCKRITPLKAERGNSSGNVVSVGEDGFLVQRNLKLPDFASLVNAADSEDCERNCHQNNSCTAYAYVLGIGCMVWDMELVDVQHFANFGNTLNIRLADSDLESYDGQVVITAYDFYVFKYRWWGEKNQNLDNIRCCGGADLPWSHCMAAFCNNINSDVQVIGFGPTISTDLSAEVSQSADLSLEGNQLSGAELSMFSFSYILMATNNFSEENKLGQGGFGPVYKGKLVGGEEIAVKRLSRRSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKLLVYEYMPNKSLDRFLFDPVKQTKLDWTKRCEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGMARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGILLLEIVSGRRNTSFRDSDDSSLIDYAWRLWSEKREMDFVDSSIRDSSPKSKALRCIHIGMLCVQDSAAHRPNMSSVVLMLESEATTLPLPKQPLLTSIRRYEETEFNTEGLDMSNDLSVTMVTGR. 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04986 856 SMART ntp_6 356 429 IPR003609 -
Seca12g04986 856 PIRSF SRK 2 856 IPR024171 GO:0004674
Seca12g04986 856 SMART blect_4 37 155 IPR001480 -
Seca12g04986 856 Gene3D Transferase(Phosphotransferase) domain 1 617 819 - -
Seca12g04986 856 Pfam PAN-like domain 357 415 IPR003609 -
Seca12g04986 856 Pfam Protein tyrosine and serine/threonine kinase 544 809 IPR001245 GO:0004672|GO:0006468
Seca12g04986 856 CDD STKc_IRAK 547 812 - -
Seca12g04986 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Seca12g04986 856 Pfam D-mannose binding lectin 80 181 IPR001480 -
Seca12g04986 856 ProSiteProfiles Bulb-type lectin domain profile. 29 152 IPR001480 -
Seca12g04986 856 CDD PAN_AP_plant 358 430 - -
Seca12g04986 856 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 802 - -
Seca12g04986 856 SUPERFAMILY Protein kinase-like (PK-like) 526 834 IPR011009 -
Seca12g04986 856 ProSiteProfiles Protein kinase domain profile. 541 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04986 856 SMART serkin_6 541 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04986 856 Gene3D - 24 152 IPR036426 -
Seca12g04986 856 Gene3D Phosphorylase Kinase; domain 1 503 616 - -
Seca12g04986 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 819 - -
Seca12g04986 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Seca12g04986 856 CDD B_lectin 41 155 IPR001480 -
Seca12g04986 856 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544
Seca12g04986 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 506 616 - -
Seca12g04986 856 ProSiteProfiles PAN/Apple domain profile. 356 430 IPR003609 -
Seca12g04986 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04986 Seca-Chr12 135825177 135832107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04986 511 824 Receptor kinase-like Gene Family AT4G23140 60.125 3.94e-132 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g04986 PK_Tyr_Ser-Thr 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04986 - - cam:101504189 1192.95