Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04984 ATGTTGGAATCTGGTATATGTCTAAATCTACTGTCATATGCGTGGCTAACGGAGGGAGTACGAATTATACATAGAGATTTGAAGGCAAGTAACATATTATTGGATGAAGGGTTGAATCCAAAAATATCAGATTTTGGCATGGCTAAAATATTTGGAGACAGTGAAGTGTGGGGCAAGACAAGAAGAATTGTTGGAACATATGGCTATATTTCTCCAGAATATGCAATGCAAGGAATAGTTTATGAGCTATTTGATGTCTTCAGCTTTGGAGTTTTACTACAAGAGATTATTAGTGGGGAAGAAACACTAGCATTCTGA 318 0.3648 MLESGICLNLLSYAWLTEGVRIIHRDLKASNILLDEGLNPKISDFGMAKIFGDSEVWGKTRRIVGTYGYISPEYAMQGIVYELFDVFSFGVLLQEIISGEETLAF. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04984 105 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 100 - -
Seca12g04984 105 Gene3D Transferase(Phosphotransferase) domain 1 7 104 - -
Seca12g04984 105 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Seca12g04984 105 SUPERFAMILY Protein kinase-like (PK-like) 20 100 IPR011009 -
Seca12g04984 105 FunFam Os07g0541700 protein 8 66 - -
Seca12g04984 105 Pfam Protein kinase domain 21 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04984 105 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04984 Seca-Chr12 135798535 135798932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04984 22 105 Receptor kinase-like Gene Family AT4G23150 65.476 1.22e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g04984 Pkinase 5.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04984 - - atri:130815775 135.191