Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04983 ATGGCTTCTTTGTGGTTTCTCAATCTGGCTCTCAAATGCTTTGATCATTTCGCATGGCCTCTTCTTGCTCTGGGGTATCCTCTGTGTGCTTCAGTACAAGCAATCGAAACTGATTCCTATACAGAAACCAGGGATTTGATCTCATATTGGATACTTCTCTCATTATTATACCTCTTTGAGTATTTTTTAATGAGTCTAATTCAATGGTTCCAGTTCTGGCCTTACATTAAGTTCATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCATATGTCTATAATAACCTTATTCACCCATGCATCTCCATTAACTGGAGGAAGTTTTTTGTGGAGAAAGAAAACATTTTACTGCATGCAGATACATATAGAAAAGAGAACGGAACTGAAGCCTTAGAGAAGCTCATTGCTAGCAAGGACACAACGTATAAACCTGAGGCAGAAGCAACTAATGCTGTTAGAGCTACTTATAAAGAAACGCTACAGCATCTTGTGCAGACAAATGGAAAAAGGCTCCTGACAGAGCGCAAAGACATCAAAGATTTGGAGGTTATTGAAAAAAATGAAATTCCTGCAGTCAAGCAATATATTCCTGTCATGCCTAACCTTGCACCAAGTCATAATGCTTCAACATCAACAACAATGGTAGAAACTAGAGGAATAGCAGGGAAAGACAGATCTGGTGGGGAACTTCCTCAGAGTTCTACTACACACAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCAGGTAACAGCATCGTGTGAGCAAGACTTGAATTCTCACCTGCATGGAAGGAGACACAGGGATGCTTCTATAGCTCTGAAAGCAAAGACTAAAGCTGCTTCACAGAAGCTGAAAATCAATCAGTCCAAAGAGGAATTGAAACAGAAGAACATTAACAACCAGCTAAATTCCAAGACCAAGAATGGAGGAGAGAATATTGTTAACAAGGGGTTGAAAGGAAACGTAGTCATGGATCATAAGAAGGTGAAAGCACTGCAAAAGAACCTGTCTGCACAACCTGTTAGGATTTCCAAATTAATATGTGAAGTCTGCAATGTTACATGCACAAGTGTGGTTGACATGACCACTCACTTAAATGGGAAGAAGCACTTGGCTAATATTCAAAGTTAA 1146 0.3997 MASLWFLNLALKCFDHFAWPLLALGYPLCASVQAIETDSYTETRDLISYWILLSLLYLFEYFLMSLIQWFQFWPYIKFMIIFWLIIPDFGRASYVYNNLIHPCISINWRKFFVEKENILLHADTYRKENGTEALEKLIASKDTTYKPEAEATNAVRATYKETLQHLVQTNGKRLLTERKDIKDLEVIEKNEIPAVKQYIPVMPNLAPSHNASTSTTMVETRGIAGKDRSGGELPQSSTTHKEVQKEWTCALCQVTASCEQDLNSHLHGRRHRDASIALKAKTKAASQKLKINQSKEELKQKNINNQLNSKTKNGGENIVNKGLKGNVVMDHKKVKALQKNLSAQPVRISKLICEVCNVTCTSVVDMTTHLNGKKHLANIQS. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04983 381 Coils Coil 284 304 - -
Seca12g04983 381 PANTHER OS06G0651300 PROTEIN-RELATED 216 380 - -
Seca12g04983 381 SUPERFAMILY beta-beta-alpha zinc fingers 343 380 IPR036236 -
Seca12g04983 381 SMART c2h2final6 351 375 IPR013087 -
Seca12g04983 381 SMART c2h2final6 247 271 IPR013087 -
Seca12g04983 381 SUPERFAMILY beta-beta-alpha zinc fingers 234 281 IPR036236 -
Seca12g04983 381 Pfam Zinc-finger of C2H2 type 352 375 - -
Seca12g04983 381 Pfam Zinc-finger of C2H2 type 247 271 - -
Seca12g04983 381 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Seca12g04983 381 Gene3D Classic Zinc Finger 232 275 - -
Seca12g04983 381 Gene3D Classic Zinc Finger 328 381 - -
Seca12g04983 381 SMART ZnF_U1_5 244 278 IPR003604 GO:0003676|GO:0008270
Seca12g04983 381 SMART ZnF_U1_5 348 381 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04983 Seca-Chr12 135790172 135793904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04983 246 379 C2H2 Transcription Factor Family AT5G61190 28.369 2.26e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04983 - - lja:Lj4g3v0387230.3 426.787