Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04982 ATGGGAGCCGTTGACTTCAAGCGGTTAACAACAAGTGATTGTTTGAACTATTATTTTCCCAACCTTGAGGTGGCTTATGAATTTTATTCAAGGTATGCAATGTCAAAAGGATTTGTCGCTCAAAAGGACAGGACAGTGCTCAACAAGAGGAAAGAAATAATTCAACAAACCTTTGTTTGTTACAGGGAAGGGAGCAAAAGGAAGAAGCGTGTGGCGCGGAAAAGCATTCGTTGCGGGTGCCTAGCTGGATGTCAAGTCCACATATTGTCTAGTAACCAACATTGGTACTTCAAACAAAATTTTGAAGACCATAATCACCAGTTGCTAGATGAAAAGTATATAGGAATGCTACCTGCTCGTAGGAAGATGAATGAAGCTGATGTCCAACAAATGATGAACGTCAGGAAGGTTGGGATTACAACTCCTTATATATGGGTCATTTGCAAGTGA 450 0.4067 MGAVDFKRLTTSDCLNYYFPNLEVAYEFYSRYAMSKGFVAQKDRTVLNKRKEIIQQTFVCYREGSKRKKRVARKSIRCGCLAGCQVHILSSNQHWYFKQNFEDHNHQLLDEKYIGMLPARRKMNEADVQQMMNVRKVGITTPYIWVICK. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04982 149 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 140 - -
Seca12g04982 149 Pfam FAR1 DNA-binding domain 27 109 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04982 Seca-Chr12 135770430 135770879 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04982 FAR1 3.5e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04982 - - tpra:123915148 140.198