Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04977 ATGGCGTCACACTCACAGTACCCACCCGACTTAGATTCCGACTCCGTGGCTTCCTCCCCTCGCTCCGACCACTTCCACGAATCGCCGCCACGTGTCCGATTCATGTGCAGCTTCGGCGGCAAGATCCTCCCCCGCCCCCACGACAACCAGCTCCGTTACGTCGGCGGCGATACCCGAATCGTCGCCGTCAACCGCTCCATCTCCTTCTCCGCTCTCATCCTCAAACTCTCTAAACTCTCAGGCATGAGTAATATAACTGCGAAGTACCAGCTTCCCAACGAGGATCTCGACGCGTTGATCTCTGTTACGACGGACGAAGACGTGGAGAACATGATGGACGAGTACGACCGCGTCGCACAGAATCATAACCCGCGATCGGCTCGGCTTCGGCTCTTCCTTTTCCCCGAAGGAGAAGATTCTAGAGCCAACAGCATCAGCTCGCTCCTTAACGGCTCAACTAACCGCGAGAATTGGTTCCTCGATGCCTTAAACGGCGGCGTTTCGGGGCTCGAACGAGGTCGCTCTGAAGCCTCTTCTATGGTTTCGGAAGTACCCGATTATCTCTTCGGGTTGGATAACTCCGAAGAAACACACTCCCAAAGTCACCAACACCGCGAGCCTCGACCCAAGGAACGACTCGTTCTCCAAGATAACGTTTCCGTTTCGGATCCGGGTTCTCCCGCCCCGGTTGTATCATCCCCGTTTTGTTCCACGTCATCAGCGCCTTGCGTGCCTACTATCCCGAACCTTCCCCCGGTTAAAACCAAACCCGAAAACCCAGTTCTTGACCCTGTGATCAAGGAAAATCAACTAGAAGCTGAAACGGGTGGGCAACCGCAACCGAATCCGAATCCGAATCCGTACCAGAGTAGCCCTGTAGTACACTATCCCCCAGAAGCTGCTTACTCGGGTCATTCTGCAGTTCCTGTTTACTATGTTTCGGGTCCGGCTCAACCCGGAACTGTACCGGTCAACCCGGTACCCATGCAGGCACACTATCCCTTTGTTCAACAACCATACCACGCAATGATGCCAACTCAAGTTCCAATCGGGTACCATCATTTTGTTCAGGGTTCGGGTCAAGTATATGGTGCAGGGCCAGGGGTCAGGCATGTGACCCCGATGCATCCATATAGTCCGTCGCCGGCGGTGGTTCATGACGGTTTGAAACAACAGGTGTATCAAGCCGTGCCGAATTCCGGTTCTGTTCCGGTTTACCCGGCGATGGCGATGACCGGTGGGGATGAACTGCAGAGAGGCGGAGCGGAATTTGGGTCGGGTCGGGGCACCAACTCGTTGAATAACTGA 1308 0.5512 MASHSQYPPDLDSDSVASSPRSDHFHESPPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVNRSISFSALILKLSKLSGMSNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAQNHNPRSARLRLFLFPEGEDSRANSISSLLNGSTNRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSEETHSQSHQHREPRPKERLVLQDNVSVSDPGSPAPVVSSPFCSTSSAPCVPTIPNLPPVKTKPENPVLDPVIKENQLEAETGGQPQPNPNPNPYQSSPVVHYPPEAAYSGHSAVPVYYVSGPAQPGTVPVNPVPMQAHYPFVQQPYHAMMPTQVPIGYHHFVQGSGQVYGAGPGVRHVTPMHPYSPSPAVVHDGLKQQVYQAVPNSGSVPVYPAMAMTGGDELQRGGAEFGSGRGTNSLNN. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04977 435 Pfam PB1 domain 47 135 IPR000270 GO:0005515
Seca12g04977 435 PANTHER OS05G0427100 PROTEIN-RELATED 14 366 - -
Seca12g04977 435 MobiDBLite consensus disorder prediction 1 16 - -
Seca12g04977 435 SMART PB1_new 46 136 IPR000270 GO:0005515
Seca12g04977 435 CDD PB1_UP2 35 134 - -
Seca12g04977 435 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 51 136 - -
Seca12g04977 435 SUPERFAMILY CAD & PB1 domains 47 143 - -
Seca12g04977 435 MobiDBLite consensus disorder prediction 273 299 - -
Seca12g04977 435 MobiDBLite consensus disorder prediction 1 28 - -
Seca12g04977 435 Gene3D - 52 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04977 Seca-Chr12 135724556 135726431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04977 26 171 MAP Kinase Kinase Kinase AT5G57610 45.270 4.00e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04977 - - aprc:113858359 730.709