Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04976 ATGCTCCTTCCAGTACTAAAGCGAGTAAGTGAAGACCAGGATACTGAGCTAAAAACAGAAGCAAAAATTAAAGGGAAAAATATTTCTGATATTGAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTACTGCAATCACTGCAAAACACCTGTCTTGGATCTCCATAGAAGCTGCCCTAATTGTTCATATACCCTATGCTTAAGTTGTTGTGAGGAATTAAATCGGGGAAGACCTTCTGGAGAAATTGCCTCATCTATTTTCAAGCTACCTGATAAAATGAAAGCTTGTGTTGCCAGTGAGAGCAATACATTGGATCAGAAGACCATTTCTAGTGGCAATTTAACCACTACATCAATATTGCCTGACTCGACAAACTGTAATGTTCTTGACAGTGTATCATGCCCTCTTACCGAGCTTGGTGGTTGTGGTAATAGCCACCTTGATTTGAGATGTGTTTTCCCCTCTACTTGGATCAAAGATATGGAAGTGAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGCTGCTCCCTTTGTTTTGACACCGATCATAATACTATCAGATATAAGCAGTTACAAAAAGCAGCTCTAAGAGAAGATTCAACAGACAATTGCTTGTTTTGCCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTATGTCAAACCTCACTTGGAATCCACTGATCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAGATATGAGAATAATAAGGAATTACTTGAATCTTGTTTAGATTGGTGTGAGGTGGAAATTGACATTAGGCAGTATTTTACTGGGTCTCTCAAATGCCGTCCTCAGAAAAACACATGGCATGAGATGCTGAAACTAAAGGGGTTGCTATCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGTTAATTGAAGCTCTACCAGTTCAAGAATACATGAATCCCGTGTTTGGTCTTCTGAATTTAGCTGCAAATTTGCCACCTGGGAGTGCAAAACATGACATTGGGCCATATGTCTATATTTCATATGGTTGTGCTGAGCAAGAAGCCGACTCTGTCACAAAACTCAGCTATGACTCATATGATGTGGTTAATATTTTGACGCATACCGCGGATGTCCCCCTCTCTACAGAACAGCTGACGAAAATAAGAAAATTACTGAAAAAGCACAAAGCTCTGTGTCAAATGGAGTCTGTTGCTACTGAGCAGCTACAGGAACAGAAAGTGAAAGGAATGACATTATCCTCTGCTGAAGAAATGGAACAAAAAGGCTTGCGGAGTATGGTGAAAGAAGAAATGGACTTTTTCAGGAAAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAACGCTGCTGGCCAGAGTACAGACAGCAATATTTCCCAGGATGGAGAATGTGATTCTGATTCTGAACCCTCTTCACTTCTCCATGGGACTGTGCAAACAACTGACTTGGCTATACACAACAAATCTAGATATCCCTTTGAAAGCTCAAACAGTGATAAAAATAAGTTTACTGAGCATTCAGGAGCCCAGTGGGATGTCTTTCGTAGGCAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTCACACCCCTGACTATCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGATAGTACTCACAAAATGAGACTTAAGGAGGAGTTTAAGATCGAACCATGGACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATAAGGAATCCTAAGTGTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACTGAGTGTATCCAGTTGATTGATGAGGTCCGGCTATTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTTCATAGCATGAGTGCAGCAATTAAAGAAATACGCCAGCTAACATGCAAAACATGA 2085 0.4029 MLLPVLKRVSEDQDTELKTEAKIKGKNISDIEIKQVEFGCNEKNYCNHCKTPVLDLHRSCPNCSYTLCLSCCEELNRGRPSGEIASSIFKLPDKMKACVASESNTLDQKTISSGNLTTTSILPDSTNCNVLDSVSCPLTELGGCGNSHLDLRCVFPSTWIKDMEVKAEEIVCSYDFPETLDKSSSCSLCFDTDHNTIRYKQLQKAALREDSTDNCLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQSMSNLTWNPLIMFCTYLEQSITRYENNKELLESCLDWCEVEIDIRQYFTGSLKCRPQKNTWHEMLKLKGLLSSQIFKEQFPAHFAELIEALPVQEYMNPVFGLLNLAANLPPGSAKHDIGPYVYISYGCAEQEADSVTKLSYDSYDVVNILTHTADVPLSTEQLTKIRKLLKKHKALCQMESVATEQLQEQKVKGMTLSSAEEMEQKGLRSMVKEEMDFFRKVNRTSCISTEAKNAAGQSTDSNISQDGECDSDSEPSSLLHGTVQTTDLAIHNKSRYPFESSNSDKNKFTEHSGAQWDVFRRQDVPKLIEYLKRHYDEFSHTPDYHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNPKCCVHAVLEFVSPENVTECIQLIDEVRLLPEDHKAKVDKLEVKKMALHSMSAAIKEIRQLTCKT. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04976 694 SUPERFAMILY Clavaminate synthase-like 228 685 - -
Seca12g04976 694 SMART cupin_9 329 657 IPR003347 -
Seca12g04976 694 Gene3D Cupin 220 666 - -
Seca12g04976 694 MobiDBLite consensus disorder prediction 483 509 - -
Seca12g04976 694 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 692 IPR045109 GO:0032454|GO:0033169
Seca12g04976 694 Pfam JmjC domain, hydroxylase 543 635 IPR003347 -
Seca12g04976 694 ProSiteProfiles JmjC domain profile. 348 657 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04976 Seca-Chr12 135674088 135680622 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca12g04976 JmjC 1.5e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04976 K15601 - gmx:100810673 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04976 12 135674088 135680622 Seca6g04986 6 117229696 117235418 PCT