Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04969 ATGGATCAGTTGCCGGGAATAATATGGGATGCTGCTACTCGTTTGTTCAGTTGCACCAAAGCACATGCTGCCTATGTTTATAATGTGGAGGAAAATGTAGAGTTATTGAAAGGAAAATGGCAAGAACTTGAAAACATGTACAAGGATGTGCAACTAAGAATTCAGACCGCTGAGAGCACCGGAGAGATGCAAAGGAAAAATGAAGTTGATGGTTGGCTGCTCCAAGTTCAAGATCTTGAAAAGGAAATGACGAGTATTCTAGATTCCCCAGAAATTCATAATAATAAATGTCTAAGTGGGTACTGTTCAAAGAACTATGTGTTGAGCTACAAATTTGGGAAAAAAATTGTTAGGATGCTTAATAAAGTGGATGTCAAGTTGACTAAAGGTAGGAATTTTGATAGTATTGACATTGCTCACAAGCTACCACCTAAGCCAGTGGACGAGATGCCTTATGTTGAGACTGTAGGCTTGGATTCGATGCTGGATAAAGTCTGGAATAGTATTCAAGATGAAAATGTGAGCATCATCGGTTTATATGGAATGGCTGGAGCTGGAAAAACTACCCTCCTAAAAAGAATTCATAGTGAATTTGGAAAGAGTACGCATGACTTTGATCTAGTGTTATGGGTGGTGGTTTCAAGGGATTTTAATATCAATAACATTATGAATGATATCCGAAATAGGATAGGGATAGATGATAATATTTGGAACAAAAGTAGCAGCCAAGACCAAAGAGTGGCAAAGATCTATCAAGTCTTGAAGCAAAAGAAATTTGTGCTGATGTTGGATGACCTTTGGGGAAAGTTAGAACTAGAAAAGGTGGGAGTTCCAATTTCAAAAGATAAATCCAAAGTATTATTCACAACAAGGTCTGAGGATGTGTGTGCAAAAATGCAAGCTCAAAAGAAATTCAAAGTGGAATGTTTGAAAGAGCAAGAAGCATTTGATTTGTTTTGCCTGAAAGTAGGTGAAGAGACCTTAAAGTGTCATGGAGAAATTCCAAGGCTAGCATGGGATATGGCTAAAGAATGTGCAGGGTTACCACTAGCACTTGTTACAGTGGGAAGTGCCATGGCTGGAGTTAAAAGCATTGAAGCATGGAGGCAAGCCAAAGGTGATTTAAGGGGTTCTCCTTGGACAGCTTCAAATTTTGAGGAACAAGTCTTTCATATCCTGAAGTTTAGCTATGATAGATTGCCAGATGTAACCCACAAAAACTGCTTCCTGTATTGTGCACTATACCCAGAAGATTATAAAATCATTGTTGACAATCTTATTGATCGATGGGTTGGAGAGGGATTTCTTAGTAAAAAGAGTATATATGACATGTATGAGCAAGGGAAATCAATCATTGAAAAATTAAAGCTTTCATGTCTATTAGAGGGTGTTGAGGATTCTGATGGTGAGTGGAGGTCTGCGATTAAGATGCATGATGTGATTCGAGAAATGGCACTATGGTTAGCCCGTGATCAAGATAGAAGCAAAGAGAAAATTGTAATTCAAGGGGAAGCATTATCAATGTCAGAAATGGATTCTGAAAGATTGAATGTTGTGGAGAGGATTTCAATGATAAGTTGTAGAGGATTTTGGCAAGTACCAGCTTGTCCAAATCTCATCACCCTATGTGTGTTGGCTAAGGTGGTCATTATTGACTATTCAAATATCCAATCCATGACAAGATTGAAAGTCTTGGATCTATCAAATACTTCAATTAAATGTCTCCCAAAAGAAATAGGCCAATTATTCAACTTGGAATACCTTAACCTATCAAGAACAGAAATAGAAGAATGGTTGCCGATTGAATTGAAACATTTGAGGGTTTTAATTATGGAATATTGCAGATTCAATCTTGGATTAATTCCTTTGGAAGTAATAGAAAGCCTTGAGCAATTAAAAGTGTTCAGATTTTGTGCAGATATCAAAAGGATCATTTTTGACTACTTTGAGGGGGAGGAAACATTCCTAGAGAAGTTGGAGTCCTTACCGAAATTGGAGGAATTGTTCATCAAATTAACTACCATAAGTGGCATTCATAAATTACTTCAGTCTGCCAAATTGCGAGCTTGCTCAAGACAAGTGTGGTTTAATGACATTTTTAACCCCCTTGAAATGTCCTCATTACTAGAATCTTTATCGAGAATGAAGCATATGGAACATTTAAATCTATCACGTTTACCTCGTATTAAGGAAGGATCATCCATTACCAACACATGCCATCTTAACAAGCTTCGCTCAGTGAACATCAGTGTTTGTGGTTCAATAACTCATTTGACATGGCTGAGGTATGCTTCACTTCTTGAGTTTCTTGAGGTTTCCCATTGTATTTCAATTGAAGAAGTTGTGAAGGAAGCAGAGTATGAAGATGGTGGCTCGGACAAAGACAACACCAATGGTATTTTCCCAAATCTTAAACAACTCCGCCTTCAACATTTGCCAAATTTGGAAAGCATCTACAATGGAGCACTGGCTTTACCTTTGTTGAAATATATTTATGTTCAAAGTTGCCCAAATCTAAGGAAGCTTCCTATAAATTCTAGCTCTGCTTGCAAGGACAGCTTGATTGCAATCAGAGGAGAGGGGAGGTGGTTGAACAATTTAGAATGGGAAGAGACAGACACGACCATTAAAGATCTAGTACACTCAAAATTTCGATATATCTATACTTATACAAGCGTACAAAATCATGGCACAATGGTATTCCATGCAACGCTTATTGACATTTAG 2727 0.377 MDQLPGIIWDAATRLFSCTKAHAAYVYNVEENVELLKGKWQELENMYKDVQLRIQTAESTGEMQRKNEVDGWLLQVQDLEKEMTSILDSPEIHNNKCLSGYCSKNYVLSYKFGKKIVRMLNKVDVKLTKGRNFDSIDIAHKLPPKPVDEMPYVETVGLDSMLDKVWNSIQDENVSIIGLYGMAGAGKTTLLKRIHSEFGKSTHDFDLVLWVVVSRDFNINNIMNDIRNRIGIDDNIWNKSSSQDQRVAKIYQVLKQKKFVLMLDDLWGKLELEKVGVPISKDKSKVLFTTRSEDVCAKMQAQKKFKVECLKEQEAFDLFCLKVGEETLKCHGEIPRLAWDMAKECAGLPLALVTVGSAMAGVKSIEAWRQAKGDLRGSPWTASNFEEQVFHILKFSYDRLPDVTHKNCFLYCALYPEDYKIIVDNLIDRWVGEGFLSKKSIYDMYEQGKSIIEKLKLSCLLEGVEDSDGEWRSAIKMHDVIREMALWLARDQDRSKEKIVIQGEALSMSEMDSERLNVVERISMISCRGFWQVPACPNLITLCVLAKVVIIDYSNIQSMTRLKVLDLSNTSIKCLPKEIGQLFNLEYLNLSRTEIEEWLPIELKHLRVLIMEYCRFNLGLIPLEVIESLEQLKVFRFCADIKRIIFDYFEGEETFLEKLESLPKLEELFIKLTTISGIHKLLQSAKLRACSRQVWFNDIFNPLEMSSLLESLSRMKHMEHLNLSRLPRIKEGSSITNTCHLNKLRSVNISVCGSITHLTWLRYASLLEFLEVSHCISIEEVVKEAEYEDGGSDKDNTNGIFPNLKQLRLQHLPNLESIYNGALALPLLKYIYVQSCPNLRKLPINSSSACKDSLIAIRGEGRWLNNLEWEETDTTIKDLVHSKFRYIYTYTSVQNHGTMVFHATLIDI. 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04969 908 Gene3D Ribonuclease Inhibitor 653 857 IPR032675 -
Seca12g04969 908 FunFam Probable disease resistance protein At5g66910 309 396 - -
Seca12g04969 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 412 IPR027417 -
Seca12g04969 908 Gene3D - 310 396 IPR042197 -
Seca12g04969 908 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 36 843 - -
Seca12g04969 908 Coils Coil 40 60 - -
Seca12g04969 908 Gene3D - 136 309 IPR027417 -
Seca12g04969 908 PRINTS Disease resistance protein signature 176 191 - -
Seca12g04969 908 PRINTS Disease resistance protein signature 345 359 - -
Seca12g04969 908 PRINTS Disease resistance protein signature 557 573 - -
Seca12g04969 908 PRINTS Disease resistance protein signature 253 267 - -
Seca12g04969 908 FunFam Probable disease resistance protein At1g61300 139 304 - -
Seca12g04969 908 Gene3D - 397 486 IPR036388 -
Seca12g04969 908 FunFam Probable disease resistance protein At1g63360 397 487 - -
Seca12g04969 908 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
Seca12g04969 908 Gene3D Ribonuclease Inhibitor 503 640 IPR032675 -
Seca12g04969 908 SUPERFAMILY L domain-like 465 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04969 Seca-Chr12 135499486 135506621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04969 153 498 WRKY Transcription Factor Family AT5G45050 21.813 2.32e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04969 - K13459 adu:107480591 876.315