Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04966 ATGGGTGATGAAGAGTTCGCCGGAGAATCCAAAACGGCGGTGGCACCACCCACCGGAGCTTCCCTCCTCCGGCGAGCACTGGAGCTCATCTGCTCCTTGCTCTCTCTCTCACACTCGATCAGGGTCTTCGCCGGAAAATGGCAACTCATTCGGAACAAGCTTGAGGAGCTTCACTCCGGTCTAATCGCCGCCGAGAACTGCGATTCCGGCGAGAACCCTTCTCTTTCCCGGTTGGTCCCTTCCATTTTAGCCACCGTTAAGGAGTGTCACGATCTGGGTCAGCGCTGCGTCGATTTCTCCTACAGTGGGAAGCTTCTGATGCAGAGTGATTTGGACATGGCGTTTGCGAAGCTCGATGGTCTCGTGAAGAAGCTCTCAGAGATATACAAAACGGGTATTTTGACAAATGGGTATGCGTTGGTTGTGTCAAAACCGAGTCTTGGTGCTTCTAAAGAGGACATGAGGTTCTATGTGAGAGACCTTTTGACAAGAATGAAGATTGGTGATTTGGGTATGAAGAAACAGGCCTTGAGGAACCTTCTAGAGGTTGTGGTGGAGGATGAGAAGTATGTGAAGGTGATTGTGGATGTTGGTGATGTTGTTCATTTGTTGGTGAGTTTTCTTGGTTCAGCTGAGGTGGAAATCCAAGAGGAAAGTGCTAAGGTTGTTTCTGTTGTTGCGGGTTTTGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCACCTTTGGTTCGGGTTTTGGATTGTGGTAGTGAGTTAGGGAAGGTTGCAGCTGCAAGGTGTTTGATGAAATTAACTGAGAATTCTGATAATGCTTGGTGTGTTTCAGCTCATGGGGGTGTCACTGCCTTGTTGAATATTTGTGGGAATGCAGATTGTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTGTTAAGGAATCTTGTTGGTGTTGAGGAGATAAAGAGGTTTATGGTTGAGGAAGGTGCTGTGTCCACGTTTATTGGGCTTGTGAAATCAAAGGAGGAAACTATTCAGGTGAATTCCATTGGGTTCATTCAGAATATTGCCTCTGGTGATGAGATTGTTAGGCAGATGGTGATAAGAGAAGGTGGAATCCGTGCTTTGTTGCGAGTTTTGGATCCTAAATGGTCCTATTCTTCTAAAACCAGGGAGATAGCAATGAGGGCTATTGAGAATTTGTGTTTTTCTTCATCAAGTTCTATAAATATTCTGATGAGTTATGGCTTTGTGGATCAGCTTCTATATTATGTTCGAAATGGGGAGGTTTCAATTCAAGAGTTGGCTTTGAAAGTAGCATTTAGATTGTGTGGAACATCAGAGGAGGCTAAGAAAGCAATGGGTGATGCAGGTTTTATGTCAGAGCTTGTTAAGTTTCTCAATGCAAAATCATTTGAGGTTAGAGAAATGGCAGCTGAAGCACTCTCTAGCATGGTTATGGTACCTAGAAATAGAAAGAGATTTGTGCAAGATGATCATAACATAGCCCTTCTTCTACAATTGCTTGACCCAGAGGAGGGAAATTCAGGTAACAAAAAGTTCTTAATCTCTATCTTAATGTCATTGACAAGTTGCAACAGTGGAAGGAAAAAAATTGTTAGTTCTGGATATGCCAAAAACATTGAGAAACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAAAGACTTGTCAGGAAGCTATCCACAAACAGATTCCGCAGTATGTTGAATGGAATCTGGCACTCATGA 1734 0.4412 MGDEEFAGESKTAVAPPTGASLLRRALELICSLLSLSHSIRVFAGKWQLIRNKLEELHSGLIAAENCDSGENPSLSRLVPSILATVKECHDLGQRCVDFSYSGKLLMQSDLDMAFAKLDGLVKKLSEIYKTGILTNGYALVVSKPSLGASKEDMRFYVRDLLTRMKIGDLGMKKQALRNLLEVVVEDEKYVKVIVDVGDVVHLLVSFLGSAEVEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVRVLDCGSELGKVAAARCLMKLTENSDNAWCVSAHGGVTALLNICGNADCKGDLVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIGLVKSKEETIQVNSIGFIQNIASGDEIVRQMVIREGGIRALLRVLDPKWSYSSKTREIAMRAIENLCFSSSSSINILMSYGFVDQLLYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGFMSELVKFLNAKSFEVREMAAEALSSMVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSTNRFRSMLNGIWHS. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04966 577 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 18 576 - -
Seca12g04966 577 SMART arm_5 442 482 IPR000225 GO:0005515
Seca12g04966 577 SMART arm_5 229 269 IPR000225 GO:0005515
Seca12g04966 577 SMART arm_5 313 353 IPR000225 GO:0005515
Seca12g04966 577 SMART arm_5 355 398 IPR000225 GO:0005515
Seca12g04966 577 SMART arm_5 270 312 IPR000225 GO:0005515
Seca12g04966 577 SMART arm_5 187 228 IPR000225 GO:0005515
Seca12g04966 577 SUPERFAMILY ARM repeat 159 546 IPR016024 -
Seca12g04966 577 Gene3D - 157 566 IPR011989 -
Seca12g04966 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04966 Seca-Chr12 135395708 135397441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04966 141 372 U-box Gene Family AT2G23140 22.794 1.80e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04966 - - gmx:100809382 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04966 12 135395708 135397441 Seca6g04976 6 117157009 117158673 PCT