Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04960 ATGGATAACTTTGATGATGTTTTGATTGTTGATTTGGACGATAATAGAGATCCGGATTGTGCTATTAGTTCTGGTGAAAGTGGTAGTGAAGAGCATATTGATTTGGATGATCAAAAGGAGACTGCAGACTTAGATGCAGGAGATGATCAATATAAAAAGGTAATAGACTTGACAGCTGATGAAATACAGGGTCTAGAGTTTGGTAGTGAAGGGGAAGCTTATCAATTTTATCATACATATGCAAAATTCCATGGTTTTTTGATAAGGAAAGATGATGTCAGTCGGGATTTTAAGGGGAATATTATAATGCGGCAGTTTGTATGTAATAGAGAAGGATTAAGGAGCAAAAAGCACTTAATGAGGGTAGATAGAAAAAGAGAGCATAGACCAATCACCCGTACTAATTGTCAAGCTAGGCTTCGGATACACTTGAGTTACAAGACATCAAAATGGAAAGTTGTGTCCTTTGAGGACTCTCATAACCATGAATTAACCCCATCGAAAATCCCTGCTTACCGTGTCAAGACTAATGCAAATAAAGCTCAGGTGGATAACTTGCATTCAAATGATGTTAGAACATGTAACATATTGGGATACATGTTGGCCCAAAAAAGGGGATATGCTAGTGTTGGTATTTTGAAAAAGGATTTATACAACTATTTTGACCAGCATAAGCAAGGTTGGATTAAGGATGAGGATGCACATGCTGCCTTAAGTTATCTACAAGGCAAAGCAGACCATGATCCCATGTTCTATTCAATATACACAACTACTACTGATGGTAGATTGAAGCATCTTTTTTGGGTAGATGGAGGCAGCATAGGTGATTTTCAATGTTTTGGAGATGTTCTTGTATTTGACACCACATATAACAAAAACAAATACAACTATGGTCTTGTAATTTTCTCTGGTTGTAATCACCATTCACAGACCATTATATTTGGTTGTGCTTTGGTGTCTGATGAAACCGTTGAGACATATAAGTGGGTGTTGGAATCTTTTCTAGAAGCAATGTGCAGTAAACACCCGAAAGCTGTTGTGATTGATGGTGATGGTGCTATGAGAGATGCTATCAAGTATGTATTTCCAGATGCATCATATCGACTTTGTGCATGGCACTTGCATAATGCTGCGTGTGAATATGTCAACAATTCTCCATTTTTGGAGGATTTCAAGACAGCAATATATTATAATTTTACCCCAGATGAATTCGAAGAGTATTGGAAGAAGATGGTTGTGAAACATGAGCTTGTAGGAAACAAGTGGATTTGTGAAACATATGAGAACAAGTCATTGTGGGCCGCTGCATACTTGCGTGATAAATTCTTTGGTCGTACAAGGACTATGTCTCAATGTGAAGCCATTAATTCACTAATAAAAACATATGTTAGGAAAAAAAGCACCATTGTTGAATTTATGCATAATTTTCAGCAAGCTTTGAGGGAATACAGAAACAGTGAGTTGGCTGCTGATTTTAAGTCTCTTTTTTCAGAACCTGTGTTGACTACATCTCTTTACAAGATTGAGCATGAGGCTTCAAAAATTTACACATTGGAGATTTTTAAAGAAGTTAAACATGAGATTGAAGAGGTTGGTGCACTAAATCTTATTGAACGAATTGAAAATGGAGAGAAGTTGATGTTCAAGCTGAACAAGTATGGAAAACCTGATAATAAAATCCATGTCGTTTATGATACAACAAGGTTTAATTTTTTTTGTGATTGTCGACTTTTTGAATCTTGTGGCATTCCATGTTCCCATATTATTTGTGCCATGAAACATGAGCACATGGACTGTATTCCTAGTAGTTTGATTTACAAACGGTGGACAAAAACTGCTAAGAGTGATTTCATTTCCTCAGATCAATCAGAGGAAATAGATTCTGGTGTCATGAAGGTTGCCCGTTTTGGGGCTATAGGTGCTGCTTGTAATAAGCTTTGTGATATTGTTGTCGGAAAGAGTGAGTATTTCAATGAGATCAGAGATGAAATCTTCAAGCTAACTAAAAAGTATGAGAATCTTGGGGATCCATGTAGCAAACATAGGTCATCTATAAAGGATATTGATGATCCCACTTTGGTGAAGACGATACATACTCCTGGAAATAAGATGTATGGCAAGAAGAGGAGGCATTGTTCAAATTGTTATAGCACTAGACACACAATTAGGAGATGTCCAAGGCTCCTTGGTACAGATGATCAAAGTAGCAAGGATGATGAGTTATCACCTTCAGAGTCTTCTGGCATTAACAGAGAAGTTGATAGTGACAAAGAAGTAACACAATGTGATGAAAATAATGACCATGACACAGTGCTTACAAATTGCTCTACAAGCCATGATGTTAATAAGGGGATAGAGAAACTTAATGGTGATTGTAGAAGGAACGAAAAGAAAGTAAAATGTTCACAAAATTCAGTTAAGCACGCTAAAATCCAACCCGCTGATTCTTCCAATGGAGGTAAGCAAATTCCCCAACAGGTACCTATTTTACCCCGACCCCAAAACTTAACATTTGGTTATGGCACATTAAGCCAAGGGGTGTCCAGTTTTCCCTCAAATTCCTCAGTTCCAGTTTTCCCTCATTATGGTGGGGTTCCTTTGTATCCAACACTTCCAATTTTCCCTCAGATTCCTCAGTATATGAGTGGAGTTCAGAATGTTAGCAGTGGTATATCTTGGAATGGCTCACATGAAGAAGTCACTAAAAATCGTGGTCAAGAAGAAGTCACTAAAAATCGCGGTCAAACTAGTGGTAAGCGTGGCCAGTCTTAG 2772 0.3759 MDNFDDVLIVDLDDNRDPDCAISSGESGSEEHIDLDDQKETADLDAGDDQYKKVIDLTADEIQGLEFGSEGEAYQFYHTYAKFHGFLIRKDDVSRDFKGNIIMRQFVCNREGLRSKKHLMRVDRKREHRPITRTNCQARLRIHLSYKTSKWKVVSFEDSHNHELTPSKIPAYRVKTNANKAQVDNLHSNDVRTCNILGYMLAQKRGYASVGILKKDLYNYFDQHKQGWIKDEDAHAALSYLQGKADHDPMFYSIYTTTTDGRLKHLFWVDGGSIGDFQCFGDVLVFDTTYNKNKYNYGLVIFSGCNHHSQTIIFGCALVSDETVETYKWVLESFLEAMCSKHPKAVVIDGDGAMRDAIKYVFPDASYRLCAWHLHNAACEYVNNSPFLEDFKTAIYYNFTPDEFEEYWKKMVVKHELVGNKWICETYENKSLWAAAYLRDKFFGRTRTMSQCEAINSLIKTYVRKKSTIVEFMHNFQQALREYRNSELAADFKSLFSEPVLTTSLYKIEHEASKIYTLEIFKEVKHEIEEVGALNLIERIENGEKLMFKLNKYGKPDNKIHVVYDTTRFNFFCDCRLFESCGIPCSHIICAMKHEHMDCIPSSLIYKRWTKTAKSDFISSDQSEEIDSGVMKVARFGAIGAACNKLCDIVVGKSEYFNEIRDEIFKLTKKYENLGDPCSKHRSSIKDIDDPTLVKTIHTPGNKMYGKKRRHCSNCYSTRHTIRRCPRLLGTDDQSSKDDELSPSESSGINREVDSDKEVTQCDENNDHDTVLTNCSTSHDVNKGIEKLNGDCRRNEKKVKCSQNSVKHAKIQPADSSNGGKQIPQQVPILPRPQNLTFGYGTLSQGVSSFPSNSSVPVFPHYGGVPLYPTLPIFPQIPQYMSGVQNVSSGISWNGSHEEVTKNRGQEEVTKNRGQTSGKRGQS. 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04960 923 MobiDBLite consensus disorder prediction 727 768 - -
Seca12g04960 923 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Seca12g04960 923 SMART 26again6 571 598 IPR006564 GO:0008270
Seca12g04960 923 PANTHER OS01G0519700 PROTEIN 62 624 - -
Seca12g04960 923 MobiDBLite consensus disorder prediction 803 827 - -
Seca12g04960 923 Pfam MULE transposase domain 283 375 IPR018289 -
Seca12g04960 923 MobiDBLite consensus disorder prediction 894 923 - -
Seca12g04960 923 ProSiteProfiles Zinc finger SWIM-type profile. 558 596 IPR007527 GO:0008270
Seca12g04960 923 MobiDBLite consensus disorder prediction 750 765 - -
Seca12g04960 923 MobiDBLite consensus disorder prediction 805 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04960 Seca-Chr12 135304040 135310644 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04960 MULE 1.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04960 - - ccaj:109792835 956.436