Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04940 ATGGAGGATTTTCCAGATCAAGATGCTGAAGAGTCTCATAATAAATGTGTAAGTGGTCGTTGTCCAAAGAAATGTCTATCAAACTACAAGTTAGGAAAGAAAAGTGTGAAGATGTTCAAGGAGATGGATGAGCTACTAACCTCAGGGAAACGTTTTGTTGACAAGAATGTTGATATTGCTTACAAGGTGCCACATAAGCCAATATATGGAATGCCTTCTGGTAAGACTATAGGCTTGGACAGAATGCTCAACCAAGTATGGAATAGTCTTGAAGATGATAATGTCGGAATCATTGGCTTATATGGAATGGGTGGGGCTGGAAAAACGACCCTTATGAACAGAATTCATAATGAACTTGGAAAGAGGGAGAACAACTTTGCTCTAGTGTTGTGGGTGGTGGTTTCTAAAGATCGTGATATCAATAAAACTATGAATGATATTCGAAATAAGTTAAGGATCAGTGATGATATTTGGAACAGAAGTAGCCAAGATGAAAAGGTGACAAAGATTTATCAAGTCTTGAAACAAAAGAAATTTTTGTTAATGCTTGACGATCTATGGGAAAAGTTGGAACTAGAAATGGTGGGAGTTCCAAATCCAGAGGATGTTAATAACCAATCAAAAGTACTATTCACAACACGGCTTGAGGATGTGTGTGCTAAAATGCAAGCTCAGAAGAAATTCAAAGTGGAATGTTTGTCAGAGCGAGAAGCATTTGATTTGTTTTGTAAAAAAGTAGGTGATGAGACTTTAAAGTGTCACATGGAAATTCCAAAGCTTGCATGGGAGATGGCTAAAGAATGCGAAGGATTGCCACTGGCACTTATTACAGTGGGAAGTGCCATGGCTGGAGTGAAAAGCATTGAAGCATGGAGACAAGCCAAAAATAATTTAAGGAGTTCTCCTTGGACAGCTTCAGATTTGGAGGAGAAAGTGTTTCGTATTCTTAAATTTAGCTATGACAGACTACCAGATGAGACCCACAAAAGTTGTTTCTTGTATTGTGCTTTATATCCAGAAGACTATGAAGTCAGAGTTAATGATCTTATTGATCGATGGATTGGAGAGGGATTTCTTGGTAAAGATAAAATTAAGAAGAGTATATATGATATGTATGAGCAAGGAGAATCTATAGTTGAAAAATTGAAGCTTTCATGTCTATTAGAGGGTGTTTCTAGTGGGTTGGATGTGATTAAGATGCATGATGTGATCCGTGATATGGCATTATGGTTAGTTCGTGATCAAGATGGTAACAAAGACAAAGTTGTAATTCAAGGGGAAGCATTAGCAATGTCAGAAATGGATTTTGAAAGACTAAAACTTGTGGAGAGGATTTCCCTTATAGTTCAAGTTAGAGAAATGTGCGTTTGGCAATGGCAAGTACCTGTTTGTCCAAATCTCATAACCCTATGTTGTATACAACAAAATTTTGACAAGGCCTCATATTTTGGTCAAGAACAAAACAGTCCCGATTATTCCAATCTCCAATTCATGACAAGGTTGAAAGTCTTGGATCTATCGGGTTTTGAGGAAGCATTCCTAGAGAAATTAGAGTCCTTACCAAAATTGGAGGAACTCTGCATCGAATTAACAACCATCATTGGCATTCATAAATTACTTGAGTCAATCAAATTACAGGGTTGCTCAAGATATGTTTTGCTTAATGGAATCAAAGACCCACTTGAAATGGCATCATTATTAGCATCTTGGTCAAGAATGAAGCATTTGGAGCGTATAGGTTTAAACTGTTTAGATAACATTATGGAAGGCTCATCCATTACTCACACTTGCCATTTTCACAAGCTTCGTCGAGTGGTCATTTCTGGATGTGATTCAATAACTCATTTGAACTGGCTAAGGTATGCTTTGCTTCTTGAGTTTCTTGAAGTTAAAAGTTGTCACTCAGTTGAACAAGTTTTGAAGGAAGCCGAAGATGTTGGCTCGAGCAGAGACAACGCTAAAGATATATTCCCCAATCTTAGACATCTTCGCCTTCATTATTTGCCAAAGTTGAAGAGCATCCACATCAAAGCATTGGCTTTGCCATTCCTAAAACATATTGATGTACACGGATGCCCCAATTTAAGGAAGCTTCCTTTCAATTCTAGCTCTGCTGCCAAGGATAGCTTGATCGGAATCATAGGACCTAGCGAGTGGTGCACCAATTTAGAGTGGGAAGACACAACCACTAAAGACCTACTCCATTCTAAATTTCAACCATTCTAA 2226 0.3796 MEDFPDQDAEESHNKCVSGRCPKKCLSNYKLGKKSVKMFKEMDELLTSGKRFVDKNVDIAYKVPHKPIYGMPSGKTIGLDRMLNQVWNSLEDDNVGIIGLYGMGGAGKTTLMNRIHNELGKRENNFALVLWVVVSKDRDINKTMNDIRNKLRISDDIWNRSSQDEKVTKIYQVLKQKKFLLMLDDLWEKLELEMVGVPNPEDVNNQSKVLFTTRLEDVCAKMQAQKKFKVECLSEREAFDLFCKKVGDETLKCHMEIPKLAWEMAKECEGLPLALITVGSAMAGVKSIEAWRQAKNNLRSSPWTASDLEEKVFRILKFSYDRLPDETHKSCFLYCALYPEDYEVRVNDLIDRWIGEGFLGKDKIKKSIYDMYEQGESIVEKLKLSCLLEGVSSGLDVIKMHDVIRDMALWLVRDQDGNKDKVVIQGEALAMSEMDFERLKLVERISLIVQVREMCVWQWQVPVCPNLITLCCIQQNFDKASYFGQEQNSPDYSNLQFMTRLKVLDLSGFEEAFLEKLESLPKLEELCIELTTIIGIHKLLESIKLQGCSRYVLLNGIKDPLEMASLLASWSRMKHLERIGLNCLDNIMEGSSITHTCHFHKLRRVVISGCDSITHLNWLRYALLLEFLEVKSCHSVEQVLKEAEDVGSSRDNAKDIFPNLRHLRLHYLPKLKSIHIKALALPFLKHIDVHGCPNLRKLPFNSSSAAKDSLIGIIGPSEWCTNLEWEDTTTKDLLHSKFQPF. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04940 741 PRINTS Disease resistance protein signature 173 187 - -
Seca12g04940 741 PRINTS Disease resistance protein signature 97 112 - -
Seca12g04940 741 PRINTS Disease resistance protein signature 496 512 - -
Seca12g04940 741 PRINTS Disease resistance protein signature 268 282 - -
Seca12g04940 741 Gene3D - 320 409 IPR036388 -
Seca12g04940 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 335 IPR027417 -
Seca12g04940 741 FunFam Probable disease resistance protein At5g66910 232 319 - -
Seca12g04940 741 Gene3D - 60 230 IPR027417 -
Seca12g04940 741 SUPERFAMILY L domain-like 399 700 - -
Seca12g04940 741 Gene3D Ribonuclease Inhibitor 456 712 IPR032675 -
Seca12g04940 741 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 10 699 - -
Seca12g04940 741 Pfam NB-ARC domain 80 321 IPR002182 GO:0043531
Seca12g04940 741 FunFam Probable disease resistance protein At1g63360 320 410 - -
Seca12g04940 741 FunFam Probable disease resistance protein At1g61300 62 227 - -
Seca12g04940 741 Gene3D - 232 319 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04940 Seca-Chr12 134597858 134600324 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04940 74 695 WRKY Transcription Factor Family AT5G45050 21.229 6.38e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04940 - K13459 psat:127102790 724.161