Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04907 ATGAATGAGGCATCGATTCCAATAGCCCAAGGTGTAGATAAATGGGTAAAAAATATTCATGAAAATATCGTGCAACATGACCAGGAGAGTGTTGTTGACTATACACCATACTTGGAAATGGAGTTTGAATCTGAGGTTGCGGCCTATGAGTTTTATAATGAGTACAGTAGAAGAATTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTCTAACTTCAAGAAGGTTCGCATGCTTCAAAGAGGGTAAACGGGGCGTTGACAAACGAGACCATTTGACAAAAGAGCCTAGAGCAGAAACTAGAACAGGATGTGAATCACGTATGGTTATTTCACTTGATCGAAACATTGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCATCCTCTTCAACCGCCAGAATATGTTCATATGATTCCCTCCCATCGACACATATCTGAGTCACAAGCATCACAAATTGTATTGGCAGATGAATCTGGATTGAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAGAAGGTGTTGGTTATACAAGACAATATCATAAGAATTACCTCCGAACTAGAAGAAAACAGTTTTTAAGGTATGGTGAAGTGGGTGCATTATTGATGTACTTCAAACAACAAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTAGAAGAGCAAATAACAAATATATTTTGGGCAGATGCACAAATGATAAATGATTATGGGTACTTTGGCGATATCATCACTTTTGATAACACTTACAAGACAAATAAGGATTATCGACCTCTGAGAGTATTTCTTGGGCTTAATGATCATGGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAACAATTCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAGAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCTAAGGCTATTTCTTTAGTTATGACAGAAACATTTCATGGATTATGTACTTGGCATATGAGAGAAAACTCCCTTAGGCATGTGAACCATCTATATCAAAAGAGTTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAAGAAGGTGAATTTTTGAATGCATGGAGTGCTTTACTTGTTGACCATAGTGTTTCTGATGATTCATGGCTACACACAATTTTTCGAGTGAAGGAAAAATGGGCATGGGCTTATGTTCGAAAAACTTTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAAAATCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTTACACACATGGAAAGAGTTGTCAATGGAAAAAGGTACAATGAGTCAGAAGCTGATTATGAGTCAAGACATAAGCTGCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTACAAGCTGGAAACATTTACACTCCAAAAATATTTGAGGAATTCCAAGAGGAATATCAAGGCAATTGCATAAAGGAAATGAAAGAAGGGTTGTACATTGTTACAAATTATGATAACAGTAAGGAGCGAATAGTATTGGGGAATGTTGTGGATCAAAAGGTTGCTTGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATTAAGTTAATTCCCCAACATTATATACTAAAGAGATGGACAAGAGATGCAAGGTCAGGAAGAAATCAAGATTGGAAAGGAAAACATGTTGAATTGGATATAAAAGCCCATTTCATGAAGAGATGCAATGAGTTATGTCCTCAAATGATTAAATTGACAGATAGAGCATGTGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTGTGAAGAGTCTAATAAAATAATTGAAGTTATGTTAGCTAAAAAGTCTATGGATGGAGAAACAATGGGAAGGTGTGATGTATCCATATCAATTGCAAGTGGAAATATTGACAACAATGTGATCAACATGGATTTTGGTGGAGCAAAAGGCATAAAGAAGCGAGATTGCTCATATAAGGCTAAAAAATGA 2106 0.3566 MNEASIPIAQGVDKWVKNIHENIVQHDQESVVDYTPYLEMEFESEVAAYEFYNEYSRRIGFGIRREYGNKSKKDGILTSRRFACFKEGKRGVDKRDHLTKEPRAETRTGCESRMVISLDRNIGKYKVIDFVAQHNHPLQPPEYVHMIPSHRHISESQASQIVLADESGLKPKDFHEYVSKQVGGIEGVGYTRQYHKNYLRTRRKQFLRYGEVGALLMYFKQQSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDIITFDNTYKTNKDYRPLRVFLGLNDHGQTIVFGATLLYDETIPSFQWLFETFLRAMGGEKPKTILTDQDAAMAKAISLVMTETFHGLCTWHMRENSLRHVNHLYQKSSQFCSDFEACIDLHEEEGEFLNAWSALLVDHSVSDDSWLHTIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHMERVVNGKRYNESEADYESRHKLPRLKMKKAPMLVQAGNIYTPKIFEEFQEEYQGNCIKEMKEGLYIVTNYDNSKERIVLGNVVDQKVACDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARSGRNQDWKGKHVELDIKAHFMKRCNELCPQMIKLTDRACESHETYTFLSKVCEESNKIIEVMLAKKSMDGETMGRCDVSISIASGNIDNNVINMDFGGAKGIKKRDCSYKAKK. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04907 701 ProSiteProfiles Zinc finger SWIM-type profile. 523 570 IPR007527 GO:0008270
Seca12g04907 701 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 645 IPR031052 GO:0006355
Seca12g04907 701 Pfam MULE transposase domain 260 354 IPR018289 -
Seca12g04907 701 SMART 26again6 545 572 IPR006564 GO:0008270
Seca12g04907 701 Pfam SWIM zinc finger 531 567 IPR007527 GO:0008270
Seca12g04907 701 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g04907 701 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04907 Seca-Chr12 134185757 134187970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g04907 MULE 2.8e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04907 - - tpra:123895462 1096.65