Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04896 ATGGGAGCTGATGCTTGGGGCTCCTGGGAGGAGCTCCTCCTTGGTGGAGCTGTTCTCAGGTACGGGACCCGAGATTGGACTGTCATCGCCGCCGAGCTCCGAGCCCGAACCGTTTCTCCATACACTTTCACACCCGAGATATTATTTTTGCAGGTCTGCAAAGCCAAATATGAAGACTTGCAACAGCATCATTCTGGGTGCACGGCTTTGTTTGAGGACCTTCGGCAGAAAAGAGTAGCAGAACTTAAGAGAGCTTTGGAGCTATCTGAAGATACAATTGGGTCTCTTGAATCATTGCTTGAATCCCTTGAGGCTGGGAAGGATGAGGAAAGAGATGACTGTCATGTTGACAATGGCTCAGCTGGACCAGAATTACATGTTCCTTCTCAGAAATTGGAGAGAATTGAATCTTCTGCTAAAGAGATGTCCATGGATGGGCTAACTGCTGGGAGTTTCACACATGAAATGCAGACAAAGTGGTCTAATGAATGCCAAGTTCCAGCAATGTCTTGTGAAGATATGGAGACTAGGCCTGAAATTTCAGGGTCTATTGAACAAGAGAAAGTTTTGATTGTAGATAGGTTGGCACATATTATTTATGAAGTACAGAGAAGGGGTTTGAGAAAACCAAGAGGGAAGAGAAAGAGAAGGGATTGTGGCAGAATTATTAATGAAGCAAGTGTAAGAGAAAATGACTTTTCAGCTGATGTGTCCCGGTGTAAAGAAAGTTCTATCAGCAACTGTGGTGAAGTTGCCAAATCTTCTGGTATAAATGAGGAGAATACAGACTTGGTAAAGGATGGAATAAAAGATATGATGGAGATTTTAGATTCTGTTTTGGAGATTAAAGGTGCTTCTTCCTTCTGTCACAGGCATGATAGCCAGAAGCGAGGAAGGTACAAGAAAATAATCAGGCAGCACATGGACTTTGAGACTATAAGGTCAAGAATTAACAACCAAACAATTAAGTCAGTCATGGAACTTTTCAGAGACTTGCTGCTACTGACCAACAATGCTCTGGTCTTCTACTCCAAGAGCACTCGTGAATATAAATCTGCTCTACAGCTCAGAGAATTTGTCACCAAAAAAATGAGGGAGAATGTCAAGTGTTTTAGCAGCAGTGTCACTCATGCTAATGTCTCTACAACATTACCTGTTCATGATCCTCCTGTGAATGTAAAAAGTGTACGCCCTGGTAACCGCAAGATTGTTGCAAAGGTAGATGCTGGTGGAAGCAACTCTGCTTCTGGAGTCTCACATGGAGCTAAGAAACCACTCAGTAAAACTAAAGAGGATTCCCCACCTCCAGTGGAATCCTTATCCATCAAGAAAGCTTTTGGTGATCAACCAAAAAAGCTTGGACGTGAAGAAACTGCAGGTAAGAGACCTGCAACTCCAGTGAAGGAAAAGAAAGGAGGGAAAACAAAGTGA 1431 0.4319 MGADAWGSWEELLLGGAVLRYGTRDWTVIAAELRARTVSPYTFTPEILFLQVCKAKYEDLQQHHSGCTALFEDLRQKRVAELKRALELSEDTIGSLESLLESLEAGKDEERDDCHVDNGSAGPELHVPSQKLERIESSAKEMSMDGLTAGSFTHEMQTKWSNECQVPAMSCEDMETRPEISGSIEQEKVLIVDRLAHIIYEVQRRGLRKPRGKRKRRDCGRIINEASVRENDFSADVSRCKESSISNCGEVAKSSGINEENTDLVKDGIKDMMEILDSVLEIKGASSFCHRHDSQKRGRYKKIIRQHMDFETIRSRINNQTIKSVMELFRDLLLLTNNALVFYSKSTREYKSALQLREFVTKKMRENVKCFSSSVTHANVSTTLPVHDPPVNVKSVRPGNRKIVAKVDAGGSNSASGVSHGAKKPLSKTKEDSPPPVESLSIKKAFGDQPKKLGREETAGKRPATPVKEKKGGKTK. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04896 476 Coils Coil 79 99 - -
Seca12g04896 476 MobiDBLite consensus disorder prediction 407 476 - -
Seca12g04896 476 Pfam Bromodomain 273 353 IPR001487 GO:0005515
Seca12g04896 476 ProSiteProfiles Bromodomain profile. 300 350 IPR001487 GO:0005515
Seca12g04896 476 MobiDBLite consensus disorder prediction 448 476 - -
Seca12g04896 476 SUPERFAMILY Bromodomain 259 371 IPR036427 GO:0005515
Seca12g04896 476 SMART bromo_6 265 369 IPR001487 GO:0005515
Seca12g04896 476 Gene3D - 265 381 IPR036427 GO:0005515
Seca12g04896 476 CDD Bromodomain 269 364 - -
Seca12g04896 476 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 215 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04896 Seca-Chr12 133664946 133669996 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04896 - - gmx:100804245 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04896 12 133664946 133669996 Seca6g04948 6 116916972 116920720 PCT