Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04894 ATGGGTTGTACGAATTTGGAGTTGCATTTGCAAATTTTGATCATGTCAGTGATGATTTTCACTGGAACTTTTTGTATTGGGGACACTGACCCGCTTGATGTTGCAGCAATCAATAGTTTGTATGTGGCATTGGGATCACCTCCCCTTCAGGGGTGGAAACCTGTAGGAGGAGATCCATGTTTGGAACTGTGGCAAGGTGTGAGTTGTGTCTTCTCCAACATAACTGCCTTACAACTTGGAGGCATGAATTTAAGTGGACAGCTGGGAAGTAATTTGGATTTCCCATCCATCATAGAAATGGATCTTAGCAACAACCAGATTGGAGGGACCATTCCATCCACTTTGTCCCCTACTCTAAGGAACTTGTCACTGTCGGGTAATAAGTTAACCGGAAGCATTCCAGATACCTTATCCTCATTAACACAATTGTCAGACTTGGATCTGTCAGGTAACAACTTGAGTGGTCAGCTGCCTCCCTCGATACGGAATTTGTCATCTCTTACCACATTACACTTGGAGAACAATCAACTTGCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATCTATTCTCTCGGCCAATTCCTCCAAAGTTGTTGAGTATCCCTAATTTTAGAAAAGATGGGAATCCATTTAATACTACTATCATTCCATCACCACCAGCTGCATCCCCTTCACCCCTTGCTATGGCTCCTTCCCCGGAAAAATCACCTTGGAAAGTGGCATATAGTCCCTCTACTACCAGGAAAGCACCAACAACTGCAATTGCTAGGAGGCCTTTCAAAGCTAAGAGCATAGTTTGGATTGCTGGTGCAGGGATCTTAATATTTATTGCATTAGGAGGTTGTCTTCTAATGTTGTGGTGCTTTAAGAAAAGACCAGAGAACAAAAATTATAAGAAGCAGAACGTGGGTTCGTATACAAGAACTTTGCATAAACATACATGCAATAACTCGTTTTTCAAAACAACTAATGACGTGGAGAAAGCTGATAAACCATCACTTGTATATGGTGTACCAAATAGAAGAAGGAATTCCATTCCAAAGGTCCAGGATGGACAAGAAATACATGTGAAAAAAGTATCTGCAATTTCAGAATGCAATGATGGTTCCAAACTTCCACCCCTGCAGCCAGCACCACCACATCCTCTCCACGTCATTCCTGGAGAAAAGTTCTCCATCAATCCAACTATATCTACCAAAGTAACTGAAAGACAAAATATAACAAGTTCTATTAAAGTTTATACTGTTGCATCACTACAGGAGTACACAAATAGTTTTTCGCAAGAAAACTATATTGGGGAAGGCACACTTGGCCCAGTTTATAGGGCTGAGCTCCCTGATGGAAAGCTACTGGCAGTTAGGAAGCTAAATGCTACTGCTTCCACGGGGAAAAATCATGAACAGTTTCTTCTATTAGTGTCCAGTATCTCCAAAATTCAACATGGTAATATAGTAAGGCTTATAGGCTACTGTGCTGAGTATAGCCAACGACTACTTGTATATGAGTTTTGCAGTAATGGGACTCTACATGATGCATTGCATGCGACTGATGAACTTCAGATTAAACTTTCATGGAATGAACGCATTCGGATGTCACTTGAGGCTGCAAGAGCTTTAGAGTATCTGCATGAACACTTTCAGCCACCTATTGTGCACCAAAATTTTAGGTCTGCTAATGTTCTCCTGAATGACAAGTTGGAAGTGTGTGTCTCTGATTGTGGATTAGGTTCTTTACTATCTACTGGTTCTGCTGGTCAGTTGTTAGGACACCTCACAGCTAATGGTTACAATGCTCCAGAATTTGAGTCTGGGAGTTATACACAGCAGAGTGATGTATTTAGTTTTGGAGCTGTAATGCTAGAACTTCTCACTGGACGAAAATCCTATGACAGCTCACGGCCTCGTGGAGAGCAATTTTTGGTCAGATGGGCAGTCCCTCAACTCCATGACATTGATGCATTGTCAAAGATGGTTGACCCCTCCTTAAATGGAGTGTATCCTATGAAATCCTTGTCACGTTTTGCAGACATTATTTCTTCATGTATACAGAATGAACCTGAATTCCGGCCAGCAATGTCAGAAGTTGTTCAAGATCTCTTGCGAATGATGTAG 2139 0.4175 MGCTNLELHLQILIMSVMIFTGTFCIGDTDPLDVAAINSLYVALGSPPLQGWKPVGGDPCLELWQGVSCVFSNITALQLGGMNLSGQLGSNLDFPSIIEMDLSNNQIGGTIPSTLSPTLRNLSLSGNKLTGSIPDTLSSLTQLSDLDLSGNNLSGQLPPSIRNLSSLTTLHLENNQLAGTLFVLQDLPLQDLNIENNLFSRPIPPKLLSIPNFRKDGNPFNTTIIPSPPAASPSPLAMAPSPEKSPWKVAYSPSTTRKAPTTAIARRPFKAKSIVWIAGAGILIFIALGGCLLMLWCFKKRPENKNYKKQNVGSYTRTLHKHTCNNSFFKTTNDVEKADKPSLVYGVPNRRRNSIPKVQDGQEIHVKKVSAISECNDGSKLPPLQPAPPHPLHVIPGEKFSINPTISTKVTERQNITSSIKVYTVASLQEYTNSFSQENYIGEGTLGPVYRAELPDGKLLAVRKLNATASTGKNHEQFLLLVSSISKIQHGNIVRLIGYCAEYSQRLLVYEFCSNGTLHDALHATDELQIKLSWNERIRMSLEAARALEYLHEHFQPPIVHQNFRSANVLLNDKLEVCVSDCGLGSLLSTGSAGQLLGHLTANGYNAPEFESGSYTQQSDVFSFGAVMLELLTGRKSYDSSRPRGEQFLVRWAVPQLHDIDALSKMVDPSLNGVYPMKSLSRFADIISSCIQNEPEFRPAMSEVVQDLLRMM. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04894 712 Gene3D Ribonuclease Inhibitor 35 230 IPR032675 -
Seca12g04894 712 ProSiteProfiles Protein kinase domain profile. 435 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g04894 712 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Seca12g04894 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 513 712 - -
Seca12g04894 712 SUPERFAMILY L domain-like 33 212 - -
Seca12g04894 712 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 401 512 - -
Seca12g04894 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 710 IPR046959 -
Seca12g04894 712 ProSiteProfiles Leucine-rich repeat profile. 118 141 IPR001611 GO:0005515
Seca12g04894 712 Pfam Protein tyrosine and serine/threonine kinase 438 708 IPR001245 GO:0004672|GO:0006468
Seca12g04894 712 Gene3D Phosphorylase Kinase; domain 1 399 512 - -
Seca12g04894 712 SUPERFAMILY Protein kinase-like (PK-like) 414 708 IPR011009 -
Seca12g04894 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 146 - -
Seca12g04894 712 Gene3D Transferase(Phosphotransferase) domain 1 513 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04894 Seca-Chr12 133603855 133610620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04894 19 712 Strubbelig Receptor Gene Family AT4G03390 51.001 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca12g04894 PK_Tyr_Ser-Thr 8.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04894 - - gmx:100793423 966.452