Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04881 ATGAGGTCATGGGTCAACTTGATGTCAATGGTATGGGAAATTATCCCACTTGCATCCTCAAATGCCAATCTCAACAACCACAACAGTTCCACCGAATATTATGGATTGAACACTGGAGACGAGAAGGACTTGGACTATTCGAAACTGTTCCTTCCCACCGACGACGACGATGACATGCTTTCTATGGATATTCAGACCTTTATGAAGGTCCTCGACGAGGACGATTACGACCCTAAGGAGGTAGGGTTTATTCTTTTGCGAAACCGGATGAATGAAACTTCCAATGCTGAAACAGATGATAGACCCTTTGTTGCTGATTCATCTTTTGGTATTTTTCCTGATGGTATTGATTCTCAACTATGGACAAATGAAGAAACGATGCATAACATGAAGGCTGAAAATGTGGAGTTCTGTGCTGATATGACTTGTATGAGTAGTGGCATGCACTCAAGCACTACTGATGAGACATCATTTCAAGATAGTCAAATTGAGTTTGCAGATAGTAGTTATCCATCATTTTTTTCTGATAATGTTATCTTTGATAACAAAACATCAGTGCCACTTCCAACTGCTTCATACATGCCATGGGGACACCAACCATTTTGTGTAGATGGTGAAAGAGATGAATTGAGTACATCTTACCAAAATAATTTTCACAATGATGTTGCCGAGTTCAATGGAGGCCAAGAGATGAAACAGTTAACTGGTGTTTTGCCTTCTATGGGGTGTCAGAATTATGAATGTTTTATGAATGAGGATAATTATGCAGTTAAAACATCTGAGATATCCAATCAATATCAATATATCTTTGATGGAACTACTAGCAATTTTCAAGGAAACATGTACATCGAGAAGCAGTTTGGTTGTGTTAAGAGTGGAGGGGGAATGATTCAACATAAAGATACTGATTTTCATCTTTCAAGAGGAAATGCTGAGAATTTTCATGTTGAGGACGACTCTGATGTTTGCATTATTGAAGGCACCAGTCACCCTTCGCTTACAAGTCAATCTGATGACATTGGAAATTCCCTTACTATATCTCAATCTTCCAGATATGATGATTCCCAGCCCTACATGGTTGGGAGCACAAGGCCAAAGGCATGTGATGAGAGAAATATATTACGAGTTGCTTTGCAGGATCTTTCTCAGCCAAAGTCAGAAGTTAGCCCACCAGATGGATTGTTGGCAGTTCCACTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTTTCAACTATTGCATTAATATTAAAGGAAAGACCTTCAATACTTAGTGCATGCTCTAATGCTAAAAAAATTGAGTTAGAAACTTTGAATCTGGATGTGGAGGATGACATGCTTCCTCAGAATGGTGCCGTGAAAAAAGAATCTAATATTTGTGAGGTTATGTCAAGTAGATATCCAATCAAGAGTTTTTCAGAGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGTCCCACTAGTGTCCTGCGCCAATGGGCTGAGGAGTTGCATAACAAAGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGTAATCGAACAAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCCTGACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAGGGAATTTGTGATGATCATTCTGTACCAAGCAGGAAAAGGAAAAACCCTTCTGATTCTAATAGAAGTGCCAAGAAGGGATTGGACAGCACAATTCAGGCTGTTGCTCGACCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCATGTTGGGGTCTTCGTGCTAAGCGCAGATGGTGTTTGTCAGGGACTCCTATCCAGAATTCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGCTGTCTATACATCATTTTGTTCTACAATTAAGATCCCAATTAACCGAAATCCAACAAAAGGTTATAGAAAGCTACAAGCTGTCTTAAAGACTATTATGTTACGTCGGACCAAAGGCACACTTCTTGATGGGGAGCCTATTATTTCCTTGCCACCTAAATTTGTAGAGTTGAAAAAGGTTGACTTTTCAATGGAGGAACGTGGTTTCTATTCCAGACTAGAGGCTGATTCGCGTGCACAGTTTCAGGCATATGCTGATGCTGGAACTGTCAAGGAAAATTATGTTAACATTTTGCTGATGCTTTTACGCCTTAGACAAGCTTGTGATCACCCCCTGCTTGTAAAGCGTTACAATTCTAGCTCTTTATGGAGAGCTTCAGTTGAGATTGCAAAGAAGCTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTGCAGTTTGTGGTCATGTATTCTGTAACCAGTGCATTTGTGAACATCTTAACGGTGATGACAAGCAGTGTCCTGCTACAAAATGCAAAAGTCAACTGAGCACATCTTCAGTGTTTTCCAAAGCCACACTGAACAGTTGTCTTCCAAACCAGGGTTGTGATAATTTACCTGGTTACTCTGTTTCTGAAGTTGAAGAATTTGAGCCTTGGTGTCAGAGTAAGCAGCCATATGATTCTTCAAAAATTAAGGCGGCACTTGAGGTGTTGAAGTCATTGCGTAAGCCACAGTGCTATACATCAAAAAGTATTTCTGTGAATAACACGTTTACAGAAAATGATGACTGCCCTGGGATCTCCTCTGATGCTAACAATGGGAAATTCTTAAAGGATTCTCCTGATAGTCAAATTTTGTCTGCGAATGGAAGCTCTAATGATTCAGTTACTGTTGTAGGGGAGAAAGCGATTGTGTTTTCTCAGTGGACGAGGATGCTAGATTTACTTGAAGCATGTCTCAAGAATTCTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCGGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACTACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGACCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCACTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTCGGGGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATATTTGTTCATGATGTGA 3456 0.4045 MRSWVNLMSMVWEIIPLASSNANLNNHNSSTEYYGLNTGDEKDLDYSKLFLPTDDDDDMLSMDIQTFMKVLDEDDYDPKEVGFILLRNRMNETSNAETDDRPFVADSSFGIFPDGIDSQLWTNEETMHNMKAENVEFCADMTCMSSGMHSSTTDETSFQDSQIEFADSSYPSFFSDNVIFDNKTSVPLPTASYMPWGHQPFCVDGERDELSTSYQNNFHNDVAEFNGGQEMKQLTGVLPSMGCQNYECFMNEDNYAVKTSEISNQYQYIFDGTTSNFQGNMYIEKQFGCVKSGGGMIQHKDTDFHLSRGNAENFHVEDDSDVCIIEGTSHPSLTSQSDDIGNSLTISQSSRYDDSQPYMVGSTRPKACDERNILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPSILSACSNAKKIELETLNLDVEDDMLPQNGAVKKESNICEVMSSRYPIKSFSEQAKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGICDDHSVPSRKRKNPSDSNRSAKKGLDSTIQAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPTKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSMEERGFYSRLEADSRAQFQAYADAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSSSLWRASVEIAKKLPQEKQISLLKCLEASLALCGICNDPPEDAVVAVCGHVFCNQCICEHLNGDDKQCPATKCKSQLSTSSVFSKATLNSCLPNQGCDNLPGYSVSEVEEFEPWCQSKQPYDSSKIKAALEVLKSLRKPQCYTSKSISVNNTFTENDDCPGISSDANNGKFLKDSPDSQILSANGSSNDSVTVVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM. 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04881 1151 Gene3D - 487 603 IPR038718 -
Seca12g04881 1151 Gene3D - 604 719 IPR038718 -
Seca12g04881 1151 SMART helicmild6 1010 1093 IPR001650 -
Seca12g04881 1151 Gene3D - 367 459 IPR038718 -
Seca12g04881 1151 SMART ring_2 834 872 IPR001841 -
Seca12g04881 1151 Pfam SNF2-related domain 419 795 IPR000330 GO:0005524|GO:0140658
Seca12g04881 1151 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 987 1146 IPR001650 -
Seca12g04881 1151 ProSiteProfiles Zinc finger RING-type profile. 834 873 IPR001841 -
Seca12g04881 1151 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 414 680 IPR014001 -
Seca12g04881 1151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 827 885 IPR013083 -
Seca12g04881 1151 MobiDBLite consensus disorder prediction 576 603 - -
Seca12g04881 1151 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 601 730 - -
Seca12g04881 1151 Pfam Zinc finger, C3HC4 type (RING finger) 834 870 IPR018957 GO:0046872
Seca12g04881 1151 MobiDBLite consensus disorder prediction 576 608 - -
Seca12g04881 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 1150 IPR027417 -
Seca12g04881 1151 CDD DEXDc_SHPRH-like 399 718 - -
Seca12g04881 1151 ProSitePatterns Zinc finger RING-type signature. 849 858 IPR017907 -
Seca12g04881 1151 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 267 1150 - -
Seca12g04881 1151 SMART ultradead3 395 695 IPR014001 -
Seca12g04881 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 718 IPR027417 -
Seca12g04881 1151 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 492 578 - -
Seca12g04881 1151 SUPERFAMILY RING/U-box 831 878 - -
Seca12g04881 1151 Gene3D - 733 1150 IPR027417 -
Seca12g04881 1151 Pfam Helicase conserved C-terminal domain 994 1093 IPR001650 -
Seca12g04881 1151 CDD SF2_C_SNF 996 1103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04881 Seca-Chr12 133304243 133311450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04881 267 1150 RAD5 or RAD16-like Gene Family AT1G61140 57.871 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g04881 SNF2_N 5.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04881 - - gmx:100802436 1556.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04881 12 133304243 133311450 Seca6g04941 6 116822939 116832316 PCT