Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04878 ATGAGCTTCCACAATATGGATAACATTTTATTAAAGCTTAGGAGTTTATGCACCTTGGTTCTTTTACTTTTTCTATCTTTTGAGCCTTGTGTTTCTTCTAGGCATAGCCAATTTTGGAGTGGTGAGAGGAAATTGATGAGCTCTGGAGATAATGGTGATGATCATCTTGTGACTAATTTGCCTGGCCAGCCTCAGGTAGATTTTCAGCACTATGCTGGGTTTATCACAGTCAATGAAACCAAAGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAACCAGAAGAGAAGCCATTGGTTCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGGGCAACACAAGAGATTGGCCCATTTTTAGTGGATACTGATGGCCAAGGCCTTAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGACTATGAACAATTAGGAGATGACTTCACAGCTAATGATGCTTACTCTTTTCTGCACAATTGGTTCCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGTTATGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCTTGATAGCAACAAGGACCCATCCCTTCATATTGATCTCAAGGGTATTTTGCTTGGTAACCCTGAAACATCTGATGCTGAGGATTGGATAGGACTGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTCACAAAATAATCAAAACAAGTTGTGACTTTAACAGTAGTGATCCATGGCGTAATGAAGATTGTAGTCAAGCTGTGGATGAAGTACTTAAACAGTATAATGAAATTGATATCTATAGCCTTTACACCTCTGTTTGCTTTGCCTCTACAGCACGTTCAAATGGTCAATCAATGCAAACTTCAATGAAACGTTCATCTACAATGATGCCTAGGATGATGGGTGGTTATGACCCATGTCTTGATGACTATGCTAAAGCTTTTTATAATAGACCAGATGTTCAGAAGGCCCTTCATGCCAGTGATGGTCACAATCTAAAGAATTGGAGTATTTGCAACAACAAGATATTCAATGACTGGGCAGATTCAAAGCCATCTGTTATCCCAATCTACAGGAAGCTTATTTCAGCAGGACTTAGAATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTGCCAGTGCTGTCCACAAGGTACAGCTTAAGTTCTCTAGCTTTGCCTGTCACTAAGCCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGCGGGTGGTATGAAGAATATGAGGGGCTAACATTTGCAACATTTAGAGGAGCTGGCCATGCAGTTCCCTGTTTCAAACCAAGCAACTCGCTTGCATTCTTCTCATCCTTTCTCCTTGGAGAATCTCCACCTTCTACAAAATAA 1470 0.4129 MSFHNMDNILLKLRSLCTLVLLLFLSFEPCVSSRHSQFWSGERKLMSSGDNGDDHLVTNLPGQPQVDFQHYAGFITVNETKGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGQGLKFNNFSWNREANMLFLESPVGVGFSYSNTTSDYEQLGDDFTANDAYSFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELILDSNKDPSLHIDLKGILLGNPETSDAEDWIGLVDYAWSHAVISDETHKIIKTSCDFNSSDPWRNEDCSQAVDEVLKQYNEIDIYSLYTSVCFASTARSNGQSMQTSMKRSSTMMPRMMGGYDPCLDDYAKAFYNRPDVQKALHASDGHNLKNWSICNNKIFNDWADSKPSVIPIYRKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLALPVTKPWRPWYHENEVSGWYEEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPPSTK. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04878 489 SUPERFAMILY alpha/beta-Hydrolases 53 483 IPR029058 -
Seca12g04878 489 Gene3D - 388 482 - -
Seca12g04878 489 FunFam Carboxypeptidase 338 484 - -
Seca12g04878 489 FunFam Carboxypeptidase 388 482 - -
Seca12g04878 489 Pfam Serine carboxypeptidase 61 480 IPR001563 GO:0004185|GO:0006508
Seca12g04878 489 FunFam Carboxypeptidase 51 310 - -
Seca12g04878 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 211 IPR001563 GO:0004185|GO:0006508
Seca12g04878 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Seca12g04878 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 160 IPR001563 GO:0004185|GO:0006508
Seca12g04878 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 149 IPR001563 GO:0004185|GO:0006508
Seca12g04878 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 56 469 IPR001563 GO:0004185|GO:0006508
Seca12g04878 489 Gene3D - 341 377 - -
Seca12g04878 489 Gene3D alpha/beta hydrolase 52 310 IPR029058 -
Seca12g04878 489 ProSitePatterns Serine carboxypeptidases, serine active site. 200 207 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04878 Seca-Chr12 133224890 133229224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04878 346 483 Calmodulin-binding Proteins AT2G22960 34.532 5.64e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04878 K16297 - gmx:100793427 878.626