Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04877 ATGGACAACACAAATTCATCATCAGGCTCTCAACATCTTCAGCTTCCGCCAGGGTTTCGTTTCCATCCTACTGATGAGGAACTCGTCATTCACTATCTCAAGAAAAAAGTTGCATCTACACCTCTTCCAGTTGCCATCATAGCTGAGGTTAATCTCTACAAGTTTGACCCCTGGGAACTCCCAAGTAAAGCAACGTTTGGTGAGAACGAGTGGTATTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCGAGACCAAATAGAGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAATTGACAAGCCTATACTAACATCTGATGGGAACCAGAAAGTTGGTGTTAAGAAAGCTCTTGTTTTTTATGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGGCTTATTGATAATAATTCCTTTAACTCTAGCTCAAAAACTACTCCTCCGCCTCTTGATCCGCCAAATAGCAACAAGAAGAATCCCCTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGAGCCACACTGCCTAGGCTACCCCTAATGGAGCATGACAAACATCTTTCAATGGAGACCATGATACCAATGTCAACTCTGTCAATGGCTAATCCGAACCAGAACTCTAAACCTCCATCTTTTAGAAGCACAAGTTATGGACCAGTTGGACTTGAAAATGATGACAACTTCTTGGATGGAATCTTAGCATCAGCTGATCAGAGCATGCAAAATGGTTCTGATGATAATAACTTCCCCATGAAACGTGGAATAACATCACAATTTTGGAATGAGACAGGGTCTCCAGGGTCATCTTCTTCAAGCAAGCGTTTCCATGGTGATCTTAATAGTGGAAGCAGTATCGTTGAGGAAAACAATAATTCCTTTGTTTCCCTACTTAGCCAGATTCCTCAGAGTGTAACTTTTCATCCAAATTCGATTCTTGGTTCTGTTGGGGATGGTGTAATGAGGCAACAATTTCAGCTTCCAAGCATAAATTGGAACTGA 1041 0.4188 MDNTNSSSGSQHLQLPPGFRFHPTDEELVIHYLKKKVASTPLPVAIIAEVNLYKFDPWELPSKATFGENEWYFFSPRDRKYPNGARPNRAATSGYWKATGIDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLIDNNSFNSSSKTTPPPLDPPNSNKKNPLRLDDWVLCRIYKKSNRATLPRLPLMEHDKHLSMETMIPMSTLSMANPNQNSKPPSFRSTSYGPVGLENDDNFLDGILASADQSMQNGSDDNNFPMKRGITSQFWNETGSPGSSSSSKRFHGDLNSGSSIVEENNNSFVSLLSQIPQSVTFHPNSILGSVGDGVMRQQFQLPSINWN. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04877 346 Gene3D NAC domain 24 188 IPR036093 GO:0003677|GO:0006355
Seca12g04877 346 PANTHER NAC TRANSCRIPTION FACTOR 56 15 188 - -
Seca12g04877 346 ProSiteProfiles NAC domain profile. 15 183 IPR003441 GO:0003677|GO:0006355
Seca12g04877 346 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Seca12g04877 346 FunFam NAC transcription factor 56 24 188 - -
Seca12g04877 346 SUPERFAMILY NAC domain 9 183 IPR036093 GO:0003677|GO:0006355
Seca12g04877 346 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04877 Seca-Chr12 133221389 133223376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04877 1 346 NAC Transcription Factor Family AT1G61110 53.889 3.92e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g04877 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04877 - - gmx:100797132 518.464